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OM728298.1__WCS68428.1__Goe16_00100__00010

Bact-Vir

OM728298.1__WCS68428.1__Goe16_00100__00010

Identity

Accession:
OM728298 ↗
Kingdom:
phage

Quality

93.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Okubovirus› Bacillus_phage_vB_BsuM-Goe16

TaxID: 3026979

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-72
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.72 50.0 3.65e-01 73.2% 29.3%
4bjzA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 53.0 4.10e-01 94.4% 92.9%
3bosA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.63 47.0 4.80e-01 97.2% 83.6%
2v4jB01 3.30.70.3340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 44.0 3.62e-01 77.5% 62.9%
3rr1A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 50.0 4.11e-01 94.4% 63.5%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 41.0 3.55e-01 71.8% 91.2%
3sszA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 49.0 4.07e-01 94.4% 79.7%
4immA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 50.0 3.24e-01 94.4% 21.5%
3dsoA00 2.40.10.300 Mainly Beta › Beta Barrel › Thrombin, subunit H › Copper resistance protein K 0.58 33.0 3.43e-01 100.0% 56.1%
3havA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 41.0 3.78e-01 100.0% 59.6%
6c98A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 38.0 3.56e-01 70.4% 93.4%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 45.0 3.00e-01 93.0% 24.2%
4wjsA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 45.0 2.92e-01 94.4% 21.6%
6g6qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 47.0 3.78e-01 95.8% 50.0%
1xipA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 46.0 2.97e-01 95.8% 31.6%
6m90A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 47.0 3.09e-01 94.4% 24.7%
3bb7A01 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.55 46.0 3.56e-01 98.6% 83.3%
3ligA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.54 46.0 3.55e-01 97.2% 50.3%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.54 39.0 3.82e-01 78.9% 71.4%
2zauA01 3.30.1330.10 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain 0.53 36.0 2.94e-01 95.8% 38.9%
3tc9A02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 43.0 2.86e-01 94.4% 31.3%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 35.0 3.48e-01 83.1% 64.4%
2wm1A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.53 44.0 2.92e-01 97.2% 84.9%
6fcvB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 43.0 2.80e-01 95.8% 25.2%
2a0aA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 38.0 3.09e-01 100.0% 41.2%
2pulB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 35.0 3.28e-01 70.4% 97.8%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.50 42.0 3.78e-01 91.5% 96.9%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3827907 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.70 36.0 4.02e-01 91.5% 63.6%
3976684 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.69 50.0 4.85e-01 77.5% 78.8%
3222917 220.1.1.29 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_3 0.69 47.0 3.49e-01 71.8% 35.3%
4325664 330.7.1.0 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.65 45.0 4.82e-01 83.1% 85.0%
3924724 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.64 39.0 3.76e-01 97.2% 52.5%
4043931 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.63 43.0 4.59e-01 84.5% 83.3%
3783542 7516.1.1.61 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Mannosyl_trans3 0.62 53.0 3.30e-01 100.0% 52.8%
4001872 220.1.1.123 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.62 45.0 3.33e-01 77.5% 38.4%
4029922 3238.1.1.1 ↗ alpha superhelices › Mitochondrial mTERF-like › Mitochondrial mTERF › Mitochondrial mTERF › mTERF 0.61 45.0 3.03e-01 93.0% 19.7%
3435779 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.60 32.0 3.51e-01 91.5% 61.8%
4026562 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 48.0 3.00e-01 94.4% 18.1%
3489812 5.1.4.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,CAF1C_H4-bd 0.57 48.0 2.96e-01 94.4% 22.1%
3538099 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.57 46.0 3.50e-01 91.5% 98.9%
3935776 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 48.0 3.08e-01 94.4% 28.6%
4012652 4221.1.1.0 ↗ a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like 0.57 35.0 3.72e-01 91.5% 69.2%
3369627 5.1.4.226 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF7899 0.56 46.0 2.89e-01 93.0% 17.7%
3788588 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 47.0 2.90e-01 95.8% 36.1%
3932862 5.1.4.381 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_Prp19 0.56 47.0 3.02e-01 94.4% 22.1%
3520270 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.56 47.0 4.18e-01 94.4% 82.9%
4026544 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 47.0 3.12e-01 94.4% 23.9%
3700578 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.56 37.0 3.97e-01 100.0% 80.0%
4003932 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.56 39.0 3.26e-01 94.4% 43.3%
4960839 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 50.0 4.45e-01 100.0% 96.0%
3464113 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.55 44.0 4.02e-01 90.1% 96.0%
4032952 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.55 44.0 3.22e-01 94.4% 29.1%
3498860 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 46.0 3.02e-01 94.4% 24.6%
3790542 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 45.0 2.98e-01 94.4% 24.1%
4940177 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 40.0 4.12e-01 85.9% 81.4%
3964441 9.11.1.1 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC 0.53 43.0 4.15e-01 88.7% 93.8%
5001380 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 41.0 3.97e-01 85.9% 80.0%
4948501 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.53 33.0 2.84e-01 73.2% 36.3%
4023063 216.1.1.8 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Knl1_RWD_C 0.53 44.0 4.08e-01 95.8% 74.7%
4994780 2484.1.1.124 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.52 43.0 3.20e-01 97.2% 32.6%
3934849 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 44.0 2.83e-01 94.4% 26.6%
3632308 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 44.0 2.86e-01 94.4% 38.4%
3461988 5.1.3.54 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1668 0.51 41.0 2.71e-01 93.0% 30.6%
3517387 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 42.0 2.86e-01 94.4% 26.7%
4944767 101.1.2.883 ↗ alpha arrays › HTH › HTH › winged helix domain › Radical_SAM 0.51 42.0 4.17e-01 90.1% 94.7%
4022346 12.3.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.51 44.0 2.86e-01 95.8% 49.8%
3935137 5.1.3.152 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SSL_N 0.51 41.0 2.70e-01 94.4% 95.6%
4014859 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.50 41.0 2.73e-01 93.0% 42.8%
3904209 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 41.0 2.75e-01 94.4% 23.5%
4933001 3933.1.1.0 ↗ a+b two layers › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 0.50 38.0 3.80e-01 94.4% 80.0%