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OM728299.1__WCS68740.1__Goe19_00990__00096

Bact-Vir

OM728299.1__WCS68740.1__Goe19_00990__00096

Identity

Accession:
OM728299 ↗
Kingdom:
phage

Quality

77.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Okubovirus› Bacillus_phage_vB_BsuM-Goe19

TaxID: 3026980

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-95
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.74 47.0 4.11e-01 91.9% 44.0%
1pn2B01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.72 45.0 3.54e-01 81.1% 31.8%
3dxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 44.0 3.80e-01 100.0% 41.9%
4mjdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 42.0 3.70e-01 100.0% 41.6%
3g16B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 43.0 3.42e-01 100.0% 33.6%
1ah5A03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.64 41.0 3.96e-01 100.0% 55.8%
3t69A01 3.30.420.300 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, substrate binding domain 0.64 41.0 4.18e-01 100.0% 65.3%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.63 42.0 4.17e-01 100.0% 64.6%
2lrsA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 42.0 4.32e-01 100.0% 73.2%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.62 50.0 4.54e-01 100.0% 63.7%
3eliA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 46.0 3.66e-01 78.4% 56.2%
2rsxA00 3.10.450.420 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 40.0 3.18e-01 100.0% 32.1%
3fzxA00 2.40.360.20 Mainly Beta › Beta Barrel › YmcC-like fold › 0.60 49.0 3.60e-01 91.9% 77.8%
1ysqA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.59 42.0 3.23e-01 98.6% 30.9%
1cboA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 47.0 3.05e-01 86.5% 37.7%
1ikpA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 42.0 3.02e-01 87.8% 25.6%
5i97C00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.58 49.0 4.00e-01 100.0% 50.4%
2n8xA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.57 52.0 3.95e-01 100.0% 51.8%
2z1aA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.57 42.0 2.85e-01 81.1% 95.4%
3f14A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 37.0 3.31e-01 100.0% 45.5%
4ge1C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 48.0 3.65e-01 100.0% 46.1%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 49.0 3.88e-01 100.0% 48.3%
2imjD01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 40.0 3.32e-01 100.0% 40.8%
6a5gA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 42.0 3.39e-01 100.0% 44.1%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 38.0 3.88e-01 100.0% 75.7%
2hqlA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 48.0 4.48e-01 100.0% 92.3%
6w1kA01 3.10.180.50 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 0.54 46.0 3.17e-01 100.0% 71.0%
7bysA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 41.0 2.85e-01 86.5% 32.8%
1jc4A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 39.0 3.10e-01 100.0% 39.3%
3g8zA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 37.0 3.14e-01 100.0% 42.2%
3ll3B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 47.0 3.32e-01 100.0% 90.2%
1e5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 46.0 3.68e-01 100.0% 48.3%
1zs8A01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.53 43.0 3.35e-01 91.9% 67.8%
3ff2A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 39.0 3.37e-01 100.0% 49.6%
3vmnA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.82e-01 91.9% 78.4%
2qubA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 48.0 3.07e-01 100.0% 70.8%
2o1qA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 41.0 3.43e-01 85.1% 89.0%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.52 29.0 3.06e-01 89.2% 58.5%
2w91A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.45e-01 79.7% 64.1%
3bgaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.58e-01 89.2% 95.5%
6i0iA00 3.30.350.10 Alpha Beta › 2-Layer Sandwich › Subtilisin Inhibitor › Subtilisin inhibitor-like 0.51 39.0 3.54e-01 86.5% 100.0%
4e19A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 43.0 3.61e-01 97.3% 71.4%
2xwxA03 2.60.40.2550 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 42.0 3.84e-01 91.9% 77.6%
2ap1A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 44.0 3.58e-01 97.3% 68.3%
6iy8A01 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.50 36.0 2.77e-01 85.1% 30.7%
7f13A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 36.0 2.97e-01 100.0% 39.6%
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 45.0 2.84e-01 100.0% 23.3%
2ichA02 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.50 41.0 3.59e-01 98.6% 76.2%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3314097 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.73 52.0 5.07e-01 100.0% 68.8%
3311932 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.72 51.0 5.12e-01 100.0% 73.3%
3326860 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.72 51.0 4.89e-01 100.0% 64.7%
3810495 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.72 52.0 4.66e-01 100.0% 56.0%
3313682 708.1.1.2 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › WRKY 0.72 43.0 4.60e-01 100.0% 69.2%
3370997 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.71 51.0 4.11e-01 100.0% 39.2%
3872696 922.1.1.0 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.71 42.0 5.14e-01 79.7% 97.8%
3364715 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.70 51.0 4.91e-01 100.0% 67.1%
3358595 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.70 49.0 4.64e-01 100.0% 61.1%
5043517 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.69 53.0 3.89e-01 100.0% 31.6%
3356203 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.69 50.0 4.08e-01 100.0% 40.7%
3435767 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.69 49.0 4.41e-01 100.0% 53.3%
3351393 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.69 53.0 4.94e-01 100.0% 65.3%
3375711 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.68 49.0 4.61e-01 100.0% 62.2%
3355790 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.68 49.0 4.02e-01 100.0% 41.8%
3246974 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.67 45.0 4.05e-01 100.0% 51.0%
4004011 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.67 45.0 3.93e-01 100.0% 46.4%
4954830 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.67 49.0 3.63e-01 100.0% 30.5%
3464233 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.66 47.0 4.59e-01 100.0% 68.8%
3814983 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.66 49.0 4.94e-01 100.0% 78.7%
4340836 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.66 43.0 4.41e-01 100.0% 70.0%
3194095 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.66 46.0 4.25e-01 100.0% 56.8%
4611568 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.66 43.0 4.35e-01 100.0% 66.7%
3954736 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.65 46.0 3.58e-01 100.0% 34.4%
3827309 244.3.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.65 46.0 4.32e-01 100.0% 61.1%
3960045 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.64 45.0 4.27e-01 100.0% 61.1%
3819047 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.64 50.0 4.05e-01 100.0% 45.0%
4987581 2484.1.1.22 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.63 50.0 3.71e-01 86.5% 71.6%
4982228 2484.1.1.22 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.62 50.0 3.74e-01 86.5% 75.0%
4938869 2484.1.1.22 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.62 49.0 3.53e-01 86.5% 66.7%
4127407 2484.1.1.22 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.62 49.0 3.69e-01 86.5% 75.0%
4947486 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 45.0 3.72e-01 100.0% 43.0%
5037157 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 44.0 2.77e-01 100.0% 14.5%
4990685 2484.1.1.22 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.60 48.0 3.55e-01 86.5% 72.6%
5074262 2484.1.1.22 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.60 48.0 3.60e-01 86.5% 76.7%
3414096 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.59 50.0 4.30e-01 100.0% 86.9%
3942636 4.8.1.38 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF3418 0.59 38.0 4.10e-01 82.4% 80.0%
3805954 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.58 47.0 4.19e-01 100.0% 60.9%
3248970 101.1.12.0 ↗ alpha arrays › HTH › HTH › HTH motif inserted in other structures 0.58 51.0 4.50e-01 100.0% 90.9%
4020042 2003.1.3.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.58 47.0 3.19e-01 86.5% 35.6%
3454314 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.58 51.0 4.35e-01 97.3% 79.0%
4524129 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.57 44.0 4.11e-01 100.0% 65.3%
3341735 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.57 49.0 3.59e-01 95.9% 68.5%
3924626 2484.1.1.4 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.56 40.0 3.91e-01 100.0% 67.1%
3817220 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.56 48.0 3.27e-01 100.0% 28.2%
4227879 2003.1.2.29 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.56 42.0 2.54e-01 81.1% 65.5%
3511109 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.55 42.0 4.05e-01 93.2% 71.8%
5067153 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 3.79e-01 91.9% 84.5%
4956002 2484.4.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like 0.54 45.0 3.94e-01 90.5% 75.5%
3257390 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 47.0 3.11e-01 100.0% 25.5%
3492270 11.16.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › N-terminal domain in A1 cistron-splicing factor AAR2 › N-terminal domain in A1 cistron-splicing factor AAR2 › AAR2_1st 0.53 47.0 3.58e-01 100.0% 72.0%
4963509 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 46.0 4.16e-01 95.9% 77.0%
3310910 207.1.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1 0.52 48.0 3.43e-01 100.0% 52.7%
3975834 7045.1.1.2 ↗ a+b complex topology › C-terminal domain of RNA helicase HrpB › C-terminal domain of RNA helicase HrpB › C-terminal domain of RNA helicase HrpB › DUF3418 0.51 38.0 2.72e-01 79.7% 48.0%
3250619 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 43.0 3.80e-01 100.0% 64.5%
3315068 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.50 45.0 3.57e-01 100.0% 58.0%
4113222 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.50 41.0 3.31e-01 97.3% 47.1%