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OM728301.1__WCS69279.1__Goe20_01620__00157

Bact-Vir

OM728301.1__WCS69279.1__Goe20_01620__00157

Identity

Accession:
OM728301 ↗
Kingdom:
phage

Quality

66.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Grisebachstrassevirus› Bacillus_phage_vB_BsuM-Goe20

TaxID: 3026982

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-65
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.65 49.0 4.21e-01 82.8% 100.0%
1oruA00 2.40.33.20 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.64 57.0 4.12e-01 100.0% 97.2%
4evqA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 42.0 3.16e-01 70.3% 27.2%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.61 53.0 4.78e-01 100.0% 73.3%
2wssA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.60 53.0 4.69e-01 100.0% 71.0%
2gc9B00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 46.0 3.48e-01 85.9% 84.5%
3qtgA02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.59 49.0 4.45e-01 98.4% 92.6%
2yyzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 31.0 3.26e-01 73.4% 55.2%
2i45D00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 41.0 3.59e-01 100.0% 48.5%
2gzaA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 39.0 3.32e-01 70.3% 97.2%
3jb9F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 45.0 4.20e-01 92.2% 82.9%
1ikpA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 46.0 3.31e-01 100.0% 66.8%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.55 43.0 4.18e-01 87.5% 80.8%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.55 42.0 3.54e-01 87.5% 73.1%
4amwA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.55 43.0 2.80e-01 89.1% 86.5%
3eshA01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.54 39.0 2.74e-01 82.8% 56.9%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 36.0 2.96e-01 71.9% 78.1%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 37.0 2.78e-01 81.2% 27.9%
5jicA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 46.0 3.34e-01 96.9% 96.2%
2pf5D00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.53 44.0 3.96e-01 96.9% 65.6%
3rwxA01 2.40.128.340 Mainly Beta › Beta Barrel › Lipocalin › 0.53 37.0 3.18e-01 78.1% 70.8%
2pt7C01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 37.0 3.11e-01 73.4% 85.8%
5agvA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 37.0 2.98e-01 81.2% 37.4%
2kl0A00 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.51 40.0 3.89e-01 100.0% 78.1%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 40.0 4.01e-01 90.6% 89.4%
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 35.0 3.08e-01 73.4% 84.0%
3t91B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.51 39.0 2.87e-01 90.6% 39.3%
3uboB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 44.0 2.81e-01 100.0% 20.8%
3ecqA01 2.60.120.870 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.20e-01 100.0% 66.1%
6w9rB01 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 44.0 3.32e-01 98.4% 90.6%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 35.0 3.04e-01 73.4% 85.0%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2801583 9.2.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin 0.68 50.0 4.08e-01 78.1% 93.4%
3634374 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.68 49.0 5.38e-01 78.1% 98.0%
4012652 4221.1.1.0 ↗ a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like 0.66 49.0 4.94e-01 81.2% 90.8%
4854958 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.63 55.0 4.86e-01 100.0% 69.8%
4526316 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.63 56.0 4.89e-01 100.0% 70.5%
4128405 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.62 55.0 5.42e-01 100.0% 97.1%
3973553 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 55.0 5.36e-01 100.0% 95.7%
4204303 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 55.0 4.95e-01 100.0% 74.4%
4273414 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.62 54.0 5.32e-01 100.0% 94.3%
3199895 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.62 55.0 4.82e-01 100.0% 70.5%
4316004 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 53.0 4.91e-01 100.0% 78.8%
4111597 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.61 53.0 5.29e-01 98.4% 100.0%
5075528 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.60 42.0 3.76e-01 73.4% 66.7%
3292420 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.60 52.0 4.73e-01 100.0% 76.7%
3230548 633.23.1.5 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like 0.59 41.0 2.88e-01 73.4% 67.4%
4959653 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.57 42.0 3.99e-01 95.3% 66.7%
3524786 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.56 39.0 2.77e-01 73.4% 70.3%
4980648 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 44.0 4.35e-01 92.2% 92.9%
4292753 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.54 38.0 3.40e-01 75.0% 94.7%
4967397 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.54 42.0 4.24e-01 90.6% 95.4%
2330703 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.53 39.0 2.55e-01 85.9% 31.0%
5036616 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.53 42.0 4.20e-01 95.3% 92.9%
3582472 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.52 36.0 3.68e-01 95.3% 79.7%
4953154 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.51 36.0 3.08e-01 75.0% 93.6%
3925715 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.51 37.0 2.59e-01 79.7% 36.5%
2554619 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.50 36.0 2.34e-01 79.7% 17.7%
5066141 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.50 38.0 3.88e-01 90.6% 93.8%
3620101 391.1.2.1 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC 0.50 40.0 3.92e-01 92.2% 80.0%
D2 high residues 80-138
PDB