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OM728304.1__WCS70046.1__Goe27_01680__00163
Bact-VirOM728304.1__WCS70046.1__Goe27_01680__00163
Identity
- Accession:
- OM728304 ↗
- Kingdom:
- phage
Quality
92.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Herelleviridae›
Grisebachstrassevirus›
Bacillus_phage_vB_BsuM-Goe27
TaxID: 3026985
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-22_127-257
Domain cluster:
rep: MH077577.1__AWH13691.1__SEA_ALISHAPH_78__00077__D112-235
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01139.23 best | RtcB | 93.6 | 2.20e-26 | 86.0% | 34.0% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2epgB00 | 3.90.1860.10 | Alpha Beta › Alpha-Beta Complex › tRNA-splicing ligase RtcB › tRNA-splicing ligase RtcB | 0.74 | 71.0 | 4.89e-01 | 100.0% | 55.1% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4029069 | 304.106.1.1 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein PH1602 › Hypothetical protein PH1602 › RtcB | 0.94 | 92.0 | 6.36e-01 | 100.0% | 58.7% |
| 3599440 | 304.106.1.0 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein PH1602 › Hypothetical protein PH1602 | 0.93 | 91.0 | 6.58e-01 | 100.0% | 73.7% |
| 3704376 | 304.106.1.1 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein PH1602 › Hypothetical protein PH1602 › RtcB | 0.93 | 90.0 | 6.24e-01 | 100.0% | 58.0% |
| 4932359 | 304.106.1.1 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein PH1602 › Hypothetical protein PH1602 › RtcB | 0.93 | 90.0 | 6.35e-01 | 100.0% | 62.6% |
| 4653299 | 304.106.1.1 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein PH1602 › Hypothetical protein PH1602 › RtcB | 0.92 | 89.0 | 5.89e-01 | 100.0% | 55.9% |
| 5026077 | 304.106.1.1 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein PH1602 › Hypothetical protein PH1602 › RtcB | 0.92 | 89.0 | 6.00e-01 | 100.0% | 57.2% |
| 3967248 | 304.106.1.1 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein PH1602 › Hypothetical protein PH1602 › RtcB | 0.89 | 86.0 | 6.17e-01 | 100.0% | 63.5% |
| 4945038 | 304.106.1.0 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein PH1602 › Hypothetical protein PH1602 | 0.71 | 68.0 | 4.84e-01 | 100.0% | 61.8% |
| 4930710 | 304.106.1.0 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein PH1602 › Hypothetical protein PH1602 | 0.70 | 67.0 | 4.86e-01 | 99.3% | 67.0% |
| 5050957 | 304.106.1.0 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein PH1602 › Hypothetical protein PH1602 | 0.69 | 65.0 | 4.71e-01 | 98.7% | 58.1% |
| 4121804 | 284.1.1.9 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › TrmI-like_N | 0.53 | 24.0 | 3.31e-01 | 98.0% | 87.1% |
| 4988079 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 18.0 | 3.13e-01 | 98.7% | 100.0% |
D2
medium
residues 23-126
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01139.23 best | RtcB | 31.3 | 1.90e-07 | 98.1% | 16.7% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1j8yF01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.75 | 30.0 | 3.35e-01 | 79.8% | 45.3% |
| 1t72A01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.74 | 46.0 | 4.41e-01 | 96.2% | 55.6% |
| 1bgfA00 | 1.10.532.10 | Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain | 0.70 | 33.0 | 3.14e-01 | 85.6% | 37.1% |
| 2ieqA00 | 1.20.5.300 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.69 | 47.0 | 5.11e-01 | 93.3% | 83.0% |
| 3tbiB02 | 6.10.140.1670 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 47.0 | 4.84e-01 | 94.2% | 76.0% |
| 3aonA00 | 1.10.287.3240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 54.0 | 4.39e-01 | 94.2% | 93.6% |
| 3l8rA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.59 | 34.0 | 3.45e-01 | 92.3% | 55.9% |
| 2xubA05 | 6.10.140.1450 | Special › Helix non-globular › Helix Hairpins › | 0.58 | 41.0 | 4.25e-01 | 94.2% | 77.1% |
| 2c5uA02 | 1.10.3550.20 | Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › | 0.57 | 36.0 | 3.35e-01 | 98.1% | 49.6% |
| 1k04A02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.55 | 45.0 | 4.50e-01 | 94.2% | 84.6% |
| 3aeiA00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 39.0 | 4.16e-01 | 90.4% | 83.0% |
| 3ezqA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.54 | 43.0 | 4.23e-01 | 96.2% | 77.4% |
| 3vbbE01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.51 | 40.0 | 3.82e-01 | 81.7% | 74.8% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3500503 | 192.8.1.300 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › SOAR | 0.71 | 44.0 | 4.27e-01 | 94.2% | 56.5% |
| 3491111 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.70 | 43.0 | 4.46e-01 | 94.2% | 65.0% |
| 5056477 | 5058.1.1.2 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st | 0.69 | 41.0 | 4.41e-01 | 100.0% | 67.8% |
| 3244401 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.62 | 47.0 | 4.52e-01 | 94.2% | 70.4% |
| 3478220 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.60 | 46.0 | 4.77e-01 | 94.2% | 84.0% |
| 5028679 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.60 | 44.0 | 4.46e-01 | 94.2% | 77.7% |
| 3715891 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.59 | 42.0 | 3.64e-01 | 94.2% | 46.7% |
| 3987319 | 604.10.1.1 ↗ | alpha bundles › Spectrin repeat-like › Enzyme IIa from lactose specific PTS, IIa-lac › Enzyme IIa from lactose specific PTS, IIa-lac › PTS_IIA | 0.58 | 43.0 | 4.29e-01 | 81.7% | 74.3% |
| 4951835 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.56 | 44.0 | 4.11e-01 | 97.1% | 68.0% |
| 3413217 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.54 | 45.0 | 4.40e-01 | 92.3% | 81.7% |
| 3923871 | 192.2.1.48 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › PF26022 | 0.53 | 46.0 | 3.89e-01 | 94.2% | 58.2% |
| 4932707 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.51 | 45.0 | 4.29e-01 | 97.1% | 97.6% |
| 3538408 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.50 | 40.0 | 4.24e-01 | 84.6% | 93.7% |