←Back to structures

OM743306.1__UNA01690.1__MG295_00273__00273

Bact-Vir

OM743306.1__UNA01690.1__MG295_00273__00273

Identity

Accession:
OM743306 ↗
Kingdom:
phage

Quality

87.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Bequatrovirus› Bacillus_phage_vB_BcgM

TaxID: 2918264

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-60
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4xmeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.69 58.0 4.03e-01 92.9% 68.5%
2qw7C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.69 51.0 4.35e-01 82.1% 100.0%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 50.0 5.38e-01 91.1% 97.9%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 54.0 5.41e-01 89.3% 100.0%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 56.0 5.37e-01 94.6% 96.9%
2m89A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.66 50.0 3.75e-01 82.1% 61.9%
7x36A01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.66 48.0 2.96e-01 78.6% 22.5%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 55.0 5.42e-01 92.9% 98.3%
4qq1C03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.65 42.0 3.65e-01 71.4% 42.0%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 56.0 5.06e-01 96.4% 80.0%
2c4iA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.64 45.0 3.56e-01 75.0% 39.8%
1nqnA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.64 52.0 4.17e-01 92.9% 94.9%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 50.0 4.69e-01 85.7% 80.0%
6v04A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 46.0 3.50e-01 76.8% 42.5%
3kg6C00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.61 43.0 2.83e-01 75.0% 35.0%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 52.0 4.96e-01 96.4% 92.4%
3sb1A01 3.30.1370.140 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › HupH hydrogenase expression protein, C-terminal domain 0.61 44.0 3.81e-01 83.9% 46.5%
3e8lC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 47.0 3.46e-01 92.9% 89.8%
2ap1A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 44.0 3.39e-01 85.7% 98.6%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 50.0 3.11e-01 100.0% 33.9%
2oa9B02 3.30.70.3570 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MvaI/BcnI restriction endonuclease, recognition domain 0.57 42.0 3.34e-01 82.1% 58.3%
3q63F00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 43.0 3.28e-01 83.9% 60.4%
3ebkB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 45.0 3.48e-01 100.0% 77.4%
7bysA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 49.0 3.13e-01 100.0% 36.8%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.56 36.0 2.98e-01 73.2% 35.6%
1ilyA00 3.30.420.100 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.56 40.0 3.47e-01 76.8% 100.0%
4u6bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 46.0 2.93e-01 100.0% 72.3%
4egvA02 2.40.50.840 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 39.0 3.63e-01 76.8% 90.7%
5tkwA01 3.30.420.380 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.55 43.0 3.16e-01 89.3% 95.3%
2k49A00 2.30.29.80 Mainly Beta › Roll › PH-domain like › 0.55 40.0 3.25e-01 80.4% 42.4%
5nckA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 43.0 3.60e-01 89.3% 86.7%
3qdkB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 42.0 2.82e-01 89.3% 94.9%
5c2vB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 45.0 2.85e-01 98.2% 87.8%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 44.0 3.56e-01 100.0% 91.6%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.54 37.0 3.37e-01 73.2% 59.5%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.54 39.0 3.35e-01 78.6% 58.9%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 37.0 2.54e-01 75.0% 47.1%
3gmvX00 3.10.450.730 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › BLIP domain 0.54 36.0 2.73e-01 71.4% 25.6%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 36.0 2.44e-01 71.4% 44.9%
8adlB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 41.0 2.63e-01 87.5% 20.1%
2qggA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.53 42.0 3.87e-01 100.0% 78.3%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.53 44.0 3.64e-01 100.0% 86.7%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 3.48e-01 94.6% 64.2%
3cjeA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.52 40.0 3.05e-01 89.3% 78.7%
4dkkA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 37.0 3.43e-01 76.8% 71.6%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 41.0 4.01e-01 96.4% 95.5%
7jl1B01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.51 39.0 3.02e-01 91.1% 73.5%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 35.0 2.36e-01 75.0% 46.7%
6em3x01 3.40.50.10480 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain 0.50 36.0 2.67e-01 82.1% 85.4%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 33.0 2.96e-01 75.0% 44.3%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3931715 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.84 69.0 5.56e-01 87.5% 96.0%
3924760 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 65.0 5.49e-01 92.9% 72.2%
3938415 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 62.0 5.96e-01 92.9% 98.5%
3887433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 60.0 4.73e-01 89.3% 97.4%
3999507 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 60.0 5.57e-01 94.6% 92.9%
3585016 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 55.0 5.44e-01 85.7% 93.3%
3170649 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 58.0 4.99e-01 89.3% 84.7%
4034057 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.70 57.0 4.63e-01 89.3% 50.5%
4102064 3844.1.1.1 ↗ a+b two layers › hydrogenase expression protein-like › hydrogenase expression protein-like › hydrogenase expression protein › HupH_C 0.70 53.0 4.41e-01 85.7% 47.6%
3782313 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 58.0 5.29e-01 92.9% 85.3%
4940838 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.69 54.0 3.74e-01 85.7% 63.2%
3710561 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.69 56.0 5.38e-01 91.1% 95.4%
3232165 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 54.0 4.71e-01 89.3% 98.9%
4218488 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 58.0 5.14e-01 94.6% 78.8%
3743464 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.67 56.0 5.12e-01 94.6% 85.3%
4031159 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.67 56.0 4.11e-01 94.6% 40.3%
3482559 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 58.0 4.17e-01 100.0% 94.7%
3566631 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.67 58.0 5.12e-01 96.4% 78.8%
3784140 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 53.0 5.40e-01 87.5% 92.7%
5018537 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.66 51.0 4.26e-01 85.7% 84.0%
3948255 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 57.0 4.40e-01 100.0% 50.0%
3623785 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 55.0 4.98e-01 92.9% 81.3%
3482680 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 56.0 5.36e-01 96.4% 95.4%
3936442 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 55.0 4.67e-01 100.0% 83.0%
3787441 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 56.0 4.83e-01 98.2% 71.1%
3985986 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 49.0 3.88e-01 83.9% 88.3%
4010956 5.1.4.332 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29748 0.63 48.0 2.97e-01 85.7% 40.3%
5001088 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.63 50.0 3.84e-01 89.3% 100.0%
3254408 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 54.0 5.21e-01 100.0% 87.7%
4182884 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.63 53.0 4.21e-01 94.6% 53.0%
3482860 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.62 55.0 4.72e-01 100.0% 93.3%
3605004 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 45.0 3.32e-01 82.1% 72.1%
3475429 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 48.0 4.54e-01 89.3% 92.9%
3212707 5.1.3.9 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › OLF 0.60 49.0 3.34e-01 96.4% 89.7%
3276323 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.60 48.0 3.21e-01 94.6% 66.8%
3681159 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 50.0 3.13e-01 98.2% 78.2%
3922964 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.59 49.0 2.98e-01 94.6% 36.1%
3593811 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 48.0 3.83e-01 94.6% 95.2%
3411042 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.59 51.0 5.02e-01 94.6% 96.7%
4952072 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.58 41.0 4.28e-01 76.8% 90.0%
3929846 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 48.0 3.09e-01 98.2% 73.7%
3440964 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.57 44.0 2.84e-01 89.3% 97.8%
None — 0.57 47.0 2.68e-01 98.2% 35.2%
163462 2008.1.1.63 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › MvaI_BcnI 0.57 42.0 2.82e-01 82.1% 41.9%
3238362 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 47.0 3.02e-01 98.2% 73.2%
3592743 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 39.0 3.56e-01 73.2% 68.8%
3626264 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.57 47.0 3.04e-01 98.2% 75.6%
4095799 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 42.0 2.77e-01 83.9% 99.3%
3705541 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 47.0 4.00e-01 98.2% 86.0%
3588252 6043.1.1.0 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like 0.56 38.0 3.64e-01 71.4% 60.0%
3596085 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.56 42.0 3.80e-01 83.9% 76.2%
4887492 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 46.0 3.02e-01 98.2% 85.8%
3934636 5.1.5.102 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › OLF 0.55 46.0 3.05e-01 100.0% 41.5%
3922536 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 45.0 3.46e-01 100.0% 54.2%
3778135 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.55 45.0 3.46e-01 100.0% 58.0%
3254501 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 41.0 2.68e-01 85.7% 25.6%
5019886 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.54 36.0 3.39e-01 71.4% 81.3%
2887272 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.54 42.0 3.64e-01 94.6% 84.5%
4988344 223.1.1.23 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.54 41.0 2.97e-01 85.7% 47.6%
4508538 7556.1.1.1 ↗ a/b three-layered sandwiches › Fe-only hydrogenase › Fe-only hydrogenase › Fe-only hydrogenase › Fe_hyd_lg_C 0.53 37.0 2.30e-01 76.8% 27.2%
3630687 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 43.0 3.33e-01 98.2% 56.7%
4087213 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.53 37.0 3.55e-01 82.1% 76.0%
3501861 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 37.0 3.17e-01 78.6% 55.2%
4022776 880.1.1.1 ↗ a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.52 41.0 2.48e-01 94.6% 81.0%
3231961 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 42.0 3.70e-01 100.0% 93.7%
3520119 5.1.4.48 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.51 43.0 2.65e-01 100.0% 21.8%
4464657 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.51 34.0 3.16e-01 73.2% 50.0%
2537708 4056.1.1.4 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Head-tail_con 0.51 41.0 3.31e-01 100.0% 65.4%
1031144 6043.1.1.3 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like › CAP_assoc_N 0.50 41.0 3.67e-01 100.0% 72.5%