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OM816836.1__WCS67805.1__X__00004

Bact-Vir

OM816836.1__WCS67805.1__X__00004

Identity

Accession:
OM816836 ↗
Kingdom:
phage

Quality

86.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Uetakevirus› Klebsiella_phage_vB_KpnP_BUCT711

TaxID: 3012326

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 4-41
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4dqnA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.77 52.0 3.34e-01 73.7% 16.5%
5t3dA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.74 53.0 3.40e-01 78.9% 16.6%
5u3fB01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.74 50.0 3.35e-01 71.1% 20.7%
4ow8A02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.73 51.0 3.22e-01 73.7% 88.6%
4jn3A01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.73 52.0 3.22e-01 78.9% 13.7%
2m4eA00 1.20.120.1930 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF16691 family 0.72 49.0 3.76e-01 73.7% 31.4%
3b34A05 1.25.50.10 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain 0.70 59.0 3.47e-01 97.4% 35.7%
3hdvB00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.70 49.0 3.36e-01 73.7% 24.6%
3iq1B00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.66 56.0 3.73e-01 97.4% 23.9%
2xb4A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 48.0 3.10e-01 92.1% 16.1%
1dpsA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.60 52.0 3.45e-01 100.0% 36.5%
3b40A02 1.10.287.650 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain 0.54 48.0 4.18e-01 100.0% 72.4%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3989702 101.1.11.39 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › RE_ApaLI 0.87 56.0 4.85e-01 76.3% 45.5%
3876162 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.83 56.0 5.54e-01 71.1% 67.5%
3393443 192.29.1.164 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › RRP36 0.82 56.0 3.74e-01 71.1% 21.5%
3606062 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.81 54.0 3.66e-01 71.1% 20.0%
3665937 1.1.1.27 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_N 0.81 55.0 3.28e-01 71.1% 11.2%
4281883 230.3.1.1 ↗ a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.81 56.0 3.76e-01 73.7% 21.5%
3975557 3782.1.1.0 ↗ a+b duplicates or obligate multimers › Envelope glycoprotein GP2-related › Envelope glycoprotein GP2-related › Envelope glycoprotein GP2-related 0.80 54.0 4.50e-01 81.6% 41.5%
3415948 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.80 61.0 4.58e-01 100.0% 33.7%
3258193 4207.1.2.0 ↗ alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region 0.79 61.0 5.11e-01 89.5% 48.6%
3580409 3826.1.1.26 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › RRP36 0.79 54.0 3.65e-01 71.1% 21.5%
4248030 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.76 65.0 3.65e-01 100.0% 8.1%
3627844 3331.1.1.8 ↗ a+b two layers › Uncharacterized protein yibL › Uncharacterized protein yibL › Uncharacterized protein yibL › RRP36 0.76 54.0 3.68e-01 78.9% 22.3%
3174920 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.74 50.0 3.84e-01 71.1% 31.8%
3963134 605.4.1.4 ↗ alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › DUF202 0.72 53.0 3.81e-01 78.9% 28.6%
3575022 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.71 56.0 4.18e-01 100.0% 34.0%
2816300 221.1.1.34 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › YukD 0.68 48.0 3.49e-01 73.7% 26.8%
3510767 3343.1.1.2 ↗ alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal 0.68 57.0 3.14e-01 97.4% 17.9%
3378446 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 56.0 3.37e-01 100.0% 14.7%
3804997 568.1.1.8 ↗ few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related › GCK 0.66 57.0 4.00e-01 94.7% 42.7%
4945237 109.2.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.65 54.0 3.03e-01 100.0% 8.3%
4987535 101.1.4.18 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 0.65 57.0 3.92e-01 100.0% 34.6%
3593103 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.62 50.0 3.02e-01 94.7% 31.2%
3716959 3881.1.1.1 ↗ alpha bundles › CNOT9 binding domain CN9BD (DUF3819) › CNOT9 binding domain CN9BD (DUF3819) › CNOT9 binding domain CN9BD (DUF3819) › DUF3819 0.61 53.0 3.27e-01 100.0% 25.5%