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OM816837.1__WCS67856.1__X__00002

Bact-Vir

OM816837.1__WCS67856.1__X__00002

Identity

Accession:
OM816837 ↗
Kingdom:
phage

Quality

90.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autoscriptoviridae› Drulisvirus› Klebsiella_phage_vB_KpnP_BUCT712

TaxID: 3012327

Cluster

View cluster (49 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-71
PDB
Domain cluster: rep: MW824410.1__QZI87818.1__SIPHO054v2_p0017__00017__D309-371
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24145.2 best K1-lyase_N 122.0 1.20e-35 100.0% 87.5%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y1uA04 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 43.0 3.96e-01 95.2% 59.8%
1fbnA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 43.0 4.63e-01 83.9% 98.0%
1tm0A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.58 47.0 3.66e-01 93.5% 43.2%
2v3jA01 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.58 47.0 3.40e-01 95.2% 55.6%
6r77A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.54 44.0 3.29e-01 93.5% 45.2%
1feuA01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.54 44.0 3.94e-01 93.5% 98.9%
3lmkA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 45.0 3.32e-01 95.2% 34.9%
3p26A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 40.0 3.37e-01 83.9% 61.8%
4j3cA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.53 43.0 4.32e-01 93.5% 95.3%
1s7jA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.52 43.0 3.51e-01 100.0% 77.3%
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 39.0 3.44e-01 83.9% 62.8%
5dm6S01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.51 40.0 3.66e-01 88.7% 100.0%
4pe5B02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 42.0 3.15e-01 96.8% 41.8%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.50 32.0 3.34e-01 85.5% 69.6%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2512672 3856.1.2.1 ↗ beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta 0.85 72.0 7.01e-01 91.9% 100.0%
3251055 3856.1.2.1 ↗ beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta 0.84 74.0 7.16e-01 96.8% 98.6%
4859120 3856.1.2.0 ↗ beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain 0.83 75.0 6.40e-01 100.0% 74.5%
2409669 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.83 73.0 4.45e-01 98.4% 17.8%
2485645 3856.1.2.1 ↗ beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta 0.83 71.0 6.25e-01 93.5% 76.1%
4393394 3856.1.2.1 ↗ beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain › Phage_tail_beta 0.81 70.0 6.88e-01 93.5% 100.0%
4044111 3856.1.2.0 ↗ beta sandwiches › Putative tailspike protein Orf210 N-terminal domain › Putative tailspike protein Orf210 N-terminal domain › tailspike protein Orf211 N-terminal domain 0.81 70.0 6.73e-01 95.2% 100.0%
3941952 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.80 68.0 3.87e-01 93.5% 9.4%
4962756 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.64 42.0 3.22e-01 95.2% 29.0%
3579750 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.57 48.0 3.28e-01 98.4% 42.4%
5025132 2003.1.5.10 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Fibrillarin 0.56 42.0 2.91e-01 91.9% 23.1%
3989371 1.1.9.20 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.55 46.0 4.57e-01 93.5% 96.9%
3877092 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.54 41.0 3.46e-01 83.9% 81.8%
4961968 286.1.1.4 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.54 45.0 3.34e-01 96.8% 42.8%
3598334 286.1.1.0 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like 0.54 46.0 3.32e-01 100.0% 40.0%
3232669 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.54 45.0 3.81e-01 98.4% 63.6%
3831291 286.1.1.2 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.54 46.0 3.38e-01 100.0% 39.7%
4618123 286.1.1.4 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.54 45.0 3.38e-01 98.4% 46.5%
4643882 286.1.1.2 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.53 45.0 3.61e-01 100.0% 77.0%
3576812 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.53 44.0 3.95e-01 98.4% 74.7%
4668753 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.53 44.0 3.82e-01 95.2% 96.0%
4192273 286.1.1.4 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.52 44.0 3.34e-01 98.4% 47.3%
3587565 286.1.1.2 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.52 43.0 3.48e-01 100.0% 73.6%
2723599 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.50 41.0 3.44e-01 96.8% 78.7%
4052507 239.1.1.3 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.50 40.0 3.62e-01 95.2% 100.0%
D2 high residues 564-651
PDB
Domain cluster: rep: OP079918.1__UVD41781.1__KPN7_47__00047__D152-239
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24146.3 best K1-lyase_C 66.9 2.80e-18 100.0% 94.3%
D3 medium residues 142-228
PDB
Domain cluster: rep: OP079918.1__UVD41782.1__KPN7_48__00048__D150-235
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24149.2 best K1-lyase_Rider 128.8 1.10e-37 100.0% 95.5%
D4 medium residues 255-416
PDB
Domain cluster: rep: MW865292.1__QZI86165.1__PODOV061v2_0021__00021__D403-523
D5 medium residues 417-560
PDB
Domain cluster: rep: MK203850.3__QMS42070.1__X__00018__D306-486