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OM835953.1__UNI73751.1__KP12_344__00045

Bact-Vir

OM835953.1__UNI73751.1__KP12_344__00045

Identity

Accession:
OM835953 ↗
Kingdom:
phage

Quality

88.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-53
PDB
D2 high residues 61-150
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24624.2 best Int_N 80.3 2.10e-22 100.0% 80.0%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z19A01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.82 70.0 6.77e-01 100.0% 82.0%
2a3vB01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.77 65.0 6.45e-01 96.7% 87.2%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.66 47.0 4.65e-01 98.9% 71.3%
4mtxD00 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.65 36.0 3.57e-01 90.0% 51.6%
1rp3G02 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.64 43.0 3.69e-01 87.8% 43.7%
4f7nB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.64 45.0 3.97e-01 100.0% 49.3%
1g3nC01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.61 45.0 4.17e-01 100.0% 60.0%
4izzB03 1.10.10.1670 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, flap domain 0.59 41.0 3.85e-01 74.4% 97.4%
2hpsA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 50.0 4.05e-01 100.0% 56.0%
7qpgW01 1.10.357.150 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.57 41.0 3.25e-01 76.7% 41.1%
3o7pA01 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.54 45.0 3.45e-01 92.2% 91.3%
3vbbE01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.53 39.0 3.61e-01 92.2% 58.8%
7e4mA01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.53 45.0 3.37e-01 100.0% 89.5%
2pihA00 1.20.1500.10 Mainly Alpha › Up-down Bundle › YheA-like fold › YheA/YmcA-like 0.53 35.0 3.18e-01 96.7% 48.8%
4dwlA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.53 45.0 4.24e-01 94.4% 94.4%
4iv6B01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.53 35.0 3.27e-01 73.3% 52.6%
1kf6C00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.53 37.0 3.33e-01 86.7% 51.5%
2hujA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.52 41.0 3.70e-01 100.0% 61.6%
3kdqA00 6.10.320.10 Special › Helix non-globular › Ferritin › 0.51 35.0 2.98e-01 91.1% 42.1%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3948252 186.1.1.15 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Int_N 0.94 91.0 8.21e-01 100.0% 80.9%
3977796 186.1.1.15 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Int_N 0.92 89.0 8.04e-01 100.0% 79.1%
4965168 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.80 73.0 6.71e-01 98.9% 83.5%
299159 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.77 65.0 6.24e-01 96.7% 79.6%
3958903 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.77 68.0 6.44e-01 95.6% 86.7%
5081699 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.75 62.0 6.27e-01 95.6% 90.0%
3645152 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.68 49.0 5.36e-01 100.0% 95.7%
3926959 605.6.1.0 alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like 0.60 44.0 4.59e-01 90.0% 82.4%
3760951 3930.1.1.0 alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase 0.59 45.0 4.01e-01 92.2% 55.6%
3374890 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.58 44.0 4.59e-01 81.1% 94.9%
3987865 5086.1.1.192 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › DUF7649 0.56 38.0 3.87e-01 96.7% 72.9%
4928310 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.55 44.0 4.37e-01 87.8% 91.4%
3358332 592.2.1.2 alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG 0.54 47.0 4.29e-01 100.0% 80.0%
3895759 7087.1.1.1 alpha bundles › Emopamil binding protein (EBP) transmembrane domain › Emopamil binding protein (EBP) transmembrane domain › Emopamil binding protein (EBP) transmembrane domain › EBP 0.52 41.0 3.48e-01 90.0% 89.4%
4256018 604.12.1.5 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › SUV3_C 0.52 36.0 3.69e-01 98.9% 75.3%
4951266 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.52 40.0 2.66e-01 100.0% 18.8%
4876272 142.1.1.3 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.51 34.0 3.34e-01 88.9% 62.9%
D3 high residues 177-319
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00589.28 best Phage_integrase 34.1 3.30e-08 53.1% 43.0%
PF00589.28 Phage_integrase 41.6 1.60e-10 40.6% 23.3%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1aihA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.94 92.0 8.54e-01 100.0% 84.1%
2a3vA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.89 85.0 7.25e-01 99.3% 93.4%
4a8eA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.87 77.0 7.06e-01 91.6% 81.6%
3nkhA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.86 82.0 6.94e-01 100.0% 88.7%
1ae9A00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.86 76.0 7.06e-01 91.6% 88.9%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.86 82.0 7.59e-01 100.0% 98.8%
3uxuA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.81 68.0 6.58e-01 93.0% 79.2%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.79 74.0 6.61e-01 100.0% 93.8%
3a5zD02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 24.0 3.25e-01 70.6% 85.9%
1uebA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 23.0 3.22e-01 70.6% 85.7%
1wfqA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 25.0 3.27e-01 70.6% 83.6%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 4.33e-01 100.0% 96.0%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 24.0 3.14e-01 72.0% 87.5%
3zcoA00 1.10.10.2450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.50 37.0 3.94e-01 79.0% 87.4%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3943931 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.95 69.0 7.75e-01 74.1% 92.2%
4994277 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.90 86.0 7.82e-01 100.0% 88.9%
4637388 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.89 86.0 8.03e-01 100.0% 87.6%
5016957 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.89 84.0 7.72e-01 97.9% 98.3%
5083506 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.89 85.0 7.66e-01 100.0% 90.8%
4380833 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 84.0 7.98e-01 100.0% 90.9%
4004483 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 84.0 7.50e-01 100.0% 87.9%
4966027 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 84.0 7.58e-01 100.0% 88.0%
4181053 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 84.0 7.31e-01 100.0% 88.0%
4007744 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 83.0 7.19e-01 100.0% 93.2%
4475168 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.87 83.0 7.31e-01 100.0% 86.7%
4413773 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 62.0 6.38e-01 72.7% 88.9%
4930303 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 61.0 6.78e-01 72.0% 95.7%
5059725 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 82.0 7.49e-01 100.0% 88.3%
3964657 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 82.0 7.23e-01 100.0% 87.7%
4210863 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 60.0 6.37e-01 72.0% 90.0%
3964171 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 81.0 7.48e-01 100.0% 90.2%
5073434 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 76.0 6.65e-01 93.7% 84.5%
4981577 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 60.0 6.42e-01 72.7% 93.6%
4940211 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 80.0 7.48e-01 100.0% 95.9%
4981966 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 80.0 7.01e-01 100.0% 87.5%
5030307 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 60.0 6.40e-01 72.7% 95.2%
5052541 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 60.0 6.40e-01 72.7% 96.8%
5076857 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 80.0 7.36e-01 100.0% 89.1%
3975337 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 59.0 6.09e-01 72.0% 96.3%
4183457 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 76.0 7.56e-01 95.8% 97.9%
5029991 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 58.0 6.24e-01 72.0% 92.0%
4253165 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 58.0 5.91e-01 72.0% 91.4%
5028332 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 59.0 6.26e-01 72.7% 93.6%
5008464 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 78.0 7.06e-01 100.0% 90.8%
5016981 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 58.0 6.37e-01 72.7% 95.0%
4122043 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 58.0 6.28e-01 72.0% 96.7%
3586881 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 58.0 5.70e-01 72.0% 97.3%
4392937 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.82 76.0 7.35e-01 97.9% 94.8%
3983469 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 58.0 6.26e-01 73.4% 94.4%
4964228 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 57.0 5.94e-01 72.0% 91.1%
4952765 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 58.0 5.88e-01 72.7% 92.1%
150341 101.1.8.8 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integr_3 0.81 69.0 6.67e-01 94.4% 80.0%
5012504 101.1.8.8 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integr_3 0.81 73.0 6.67e-01 94.4% 81.7%
3271483 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 74.0 6.63e-01 98.6% 95.3%
5007182 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.78 66.0 6.45e-01 89.5% 84.5%
3965072 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.78 55.0 5.74e-01 72.0% 95.4%
4034370 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 55.0 5.97e-01 72.7% 99.2%
3968456 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.64 44.0 4.96e-01 89.5% 91.7%
4236664 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.64 52.0 4.95e-01 86.7% 73.9%
4062751 2.1.1.13 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.56 24.0 3.42e-01 70.6% 90.0%
4950506 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 25.0 2.90e-01 90.2% 59.0%
5083382 2.1.1.13 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.52 23.0 3.25e-01 70.6% 91.7%