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OM867525.1__UOL48292.1__X__00018

Bact-Vir

OM867525.1__UOL48292.1__X__00018

Identity

Accession:
OM867525 ↗
Kingdom:
phage

Quality

80.4 mean pLDDT

Taxonomy

Abadenavirae› Produgelaviricota› Belvinaviricetes› Vinavirales› Asemoviridae› Rumoivirus› Vibrio_phage_vB_VruC_PG21

TaxID: 2928757

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-69
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5cdvA01 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.62 43.0 3.48e-01 74.2% 79.0%
2y9fA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 48.0 3.71e-01 90.3% 93.3%
3p54A02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.59 45.0 4.37e-01 85.5% 76.1%
2gfoA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 41.0 2.64e-01 82.3% 14.5%
1whnA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 40.0 3.46e-01 74.2% 56.4%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.57 42.0 3.68e-01 82.3% 85.3%
3f02B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 41.0 3.59e-01 80.6% 57.0%
4f87B00 3.30.720.190 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.55 38.0 3.89e-01 75.8% 74.2%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 43.0 3.78e-01 93.5% 74.3%
4q8gA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 43.0 2.74e-01 90.3% 17.2%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.54 40.0 3.19e-01 82.3% 79.5%
2k3yA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 45.0 3.79e-01 98.4% 88.7%
4h63Q04 3.90.1150.120 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.54 42.0 3.41e-01 98.4% 44.8%
3r6aB00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 39.0 3.17e-01 79.0% 85.2%
2dn6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 42.0 3.62e-01 95.2% 67.0%
2cmzA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.53 38.0 3.38e-01 77.4% 82.8%
4cc2A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 39.0 3.94e-01 83.9% 96.8%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.52 38.0 3.39e-01 80.6% 63.2%
3d6wB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 41.0 3.98e-01 87.1% 78.6%
3pfsB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 42.0 3.49e-01 100.0% 71.5%
4uopA01 3.30.1120.170 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.51 34.0 3.09e-01 79.0% 45.2%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 38.0 3.34e-01 83.9% 66.3%
4purB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 35.0 3.14e-01 96.8% 49.5%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 38.0 3.77e-01 85.5% 85.3%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.67 41.0 2.64e-01 71.0% 12.8%
5030311 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 41.0 4.28e-01 71.0% 74.5%
3702861 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.61 42.0 4.36e-01 79.0% 80.0%
3709028 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.61 44.0 2.98e-01 82.3% 20.1%
4096988 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 47.0 3.22e-01 85.5% 31.9%
3680657 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.60 47.0 2.96e-01 90.3% 20.2%
3627795 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 46.0 4.20e-01 87.1% 77.6%
3912099 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 48.0 4.13e-01 93.5% 73.3%
3734570 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.58 43.0 2.72e-01 82.3% 14.1%
3402652 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.58 43.0 2.76e-01 82.3% 14.4%
4064585 2003.2.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 0.58 42.0 2.54e-01 75.8% 58.8%
3510148 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 46.0 3.75e-01 91.9% 59.2%
3208203 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.57 37.0 3.94e-01 80.6% 76.4%
5002261 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 41.0 2.87e-01 80.6% 21.7%
3859895 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.56 44.0 2.83e-01 93.5% 20.0%
3913637 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.54 41.0 3.72e-01 85.5% 68.9%
4580252 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.54 33.0 3.47e-01 75.8% 67.3%
3629240 719.1.1.2 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.54 42.0 3.56e-01 87.1% 62.7%
4351809 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.54 41.0 4.20e-01 85.5% 91.7%
3929123 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.54 43.0 2.79e-01 93.5% 97.1%
3882131 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 42.0 2.69e-01 93.5% 20.5%
3967950 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 36.0 4.05e-01 83.9% 100.0%
3888963 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 42.0 2.78e-01 95.2% 23.7%
3936608 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 42.0 3.58e-01 91.9% 61.8%
3404812 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.53 43.0 3.53e-01 98.4% 73.8%
3265308 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 42.0 3.28e-01 95.2% 58.1%
3901117 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.52 42.0 3.18e-01 100.0% 33.3%
3626345 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 41.0 3.45e-01 87.1% 70.0%
4040812 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.52 43.0 3.88e-01 95.2% 92.1%
1413813 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.52 40.0 4.17e-01 83.9% 96.4%
3806474 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 31.0 3.52e-01 72.6% 92.5%
3522910 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.52 42.0 4.05e-01 96.8% 89.3%
3947154 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.51 42.0 3.82e-01 95.2% 91.1%
3770399 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.51 42.0 3.61e-01 100.0% 61.8%
3409803 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.51 38.0 2.43e-01 83.9% 86.2%
3973146 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.51 37.0 4.01e-01 83.9% 98.0%
3507338 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 38.0 3.87e-01 85.5% 86.7%
2077327 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.50 42.0 3.71e-01 95.2% 87.2%
4584508 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 35.0 2.40e-01 77.4% 22.1%