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OM868076.1__UPT53104.1__X__00070
Bact-VirOM868076.1__UPT53104.1__X__00070
Identity
- Accession:
- OM868076 ↗
- Kingdom:
- phage
Quality
87.5
mean pLDDT
Taxonomy
TaxID: 2928847
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 28-86
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2iqcA00 | 1.25.40.490 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.76 | 57.0 | 4.05e-01 | 86.4% | 27.7% |
| 3bhnA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.70 | 59.0 | 4.09e-01 | 98.3% | 41.3% |
| 2ip6A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.68 | 43.0 | 3.81e-01 | 71.2% | 43.7% |
| 3hjlA03 | 1.20.5.2020 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.67 | 45.0 | 5.07e-01 | 74.6% | 100.0% |
| 3qsgA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.66 | 56.0 | 4.62e-01 | 98.3% | 53.9% |
| 3q1pA01 | 6.10.250.1120 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.66 | 41.0 | 4.87e-01 | 79.7% | 97.4% |
| 2klqA00 | 1.20.58.870 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 55.0 | 4.52e-01 | 100.0% | 95.6% |
| 4ad9A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 50.0 | 4.57e-01 | 91.5% | 73.8% |
| 2qorA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 51.0 | 3.96e-01 | 88.1% | 74.6% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.63 | 42.0 | 4.32e-01 | 89.8% | 70.7% |
| 2kz5A00 | 1.10.880.10 | Mainly Alpha › Orthogonal Bundle › Transcription Factor Skn-1; Chain P › Transcription factor, Skn-1-like, DNA-binding domain | 0.63 | 54.0 | 4.71e-01 | 96.6% | 68.1% |
| 3l9tA01 | 1.10.1240.70 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.63 | 44.0 | 4.05e-01 | 79.7% | 54.2% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 46.0 | 4.76e-01 | 83.1% | 100.0% |
| 7vkcA01 | 1.10.1070.20 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › | 0.61 | 47.0 | 3.51e-01 | 88.1% | 62.4% |
| 1a9xA04 | 1.10.1030.10 | Mainly Alpha › Orthogonal Bundle › Carbamoyl Phosphate Synthetase; Chain A, domain 4 › Carbamoyl-phosphate synthetase, large subunit oligomerisation domain | 0.58 | 50.0 | 3.80e-01 | 100.0% | 69.3% |
| 2c5uA02 | 1.10.3550.20 | Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › | 0.58 | 49.0 | 3.87e-01 | 98.3% | 45.8% |
| 2xigA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 43.0 | 3.86e-01 | 88.1% | 62.6% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 37.0 | 3.19e-01 | 72.9% | 67.6% |
| 3l8rA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.55 | 45.0 | 3.74e-01 | 89.8% | 78.4% |
| 1q2lA04 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.55 | 39.0 | 2.70e-01 | 78.0% | 26.8% |
| 2o4cA03 | 3.30.1370.170 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Erythronate-4-phosphate dehydrogenase, dimerisation domain | 0.54 | 40.0 | 3.57e-01 | 81.4% | 98.9% |
| 2fe3B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 41.0 | 3.79e-01 | 88.1% | 62.4% |
| 3kbbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.53 | 42.0 | 4.02e-01 | 86.4% | 82.9% |
| 3onjA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.51 | 40.0 | 3.48e-01 | 89.8% | 84.5% |
| 2crbA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.51 | 43.0 | 3.66e-01 | 94.9% | 64.9% |
| 2ckzA01 | 6.10.140.870 | Special › Helix non-globular › Helix Hairpins › | 0.50 | 38.0 | 4.13e-01 | 81.4% | 100.0% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3696809 | 101.1.2.251 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF6581 | 0.72 | 55.0 | 4.99e-01 | 86.4% | 68.2% |
| 3242342 | 109.49.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in acetyl-CoA carboxylase › Helical domain in acetyl-CoA carboxylase › ACC_central | 0.71 | 60.0 | 4.46e-01 | 100.0% | 36.8% |
| 4570259 | 4156.1.1.4 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C | 0.67 | 59.0 | 4.25e-01 | 100.0% | 47.1% |
| 3593373 | 4156.1.1.0 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like | 0.67 | 59.0 | 4.33e-01 | 100.0% | 63.1% |
| 3309615 | 4156.1.1.2 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_N,HA2_C | 0.66 | 58.0 | 3.77e-01 | 100.0% | 38.5% |
| 3925224 | 4156.1.1.4 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C | 0.65 | 58.0 | 3.99e-01 | 100.0% | 36.1% |
| 4992707 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 52.0 | 3.97e-01 | 88.1% | 37.9% |
| 5069662 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.65 | 37.0 | 3.53e-01 | 91.5% | 48.6% |
| 3740245 | 4156.1.1.4 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C | 0.64 | 57.0 | 3.85e-01 | 100.0% | 37.3% |
| 5076914 | 563.2.1.0 ↗ | alpha bundles › ATPD N-terminal domain-like › Cas Cmr5-like › Cas Cmr5-like | 0.64 | 55.0 | 4.37e-01 | 96.6% | 82.5% |
| 4666538 | 5060.2.1.0 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain | 0.62 | 51.0 | 4.12e-01 | 96.6% | 86.4% |
| 4978919 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 44.0 | 4.51e-01 | 86.4% | 89.1% |
| 3927560 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.59 | 39.0 | 3.93e-01 | 83.1% | 66.7% |
| 3300274 | 143.1.1.2 ↗ | alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain › PABC_AtC3H46 | 0.59 | 38.0 | 3.67e-01 | 74.6% | 60.0% |
| 3866856 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.59 | 45.0 | 2.91e-01 | 86.4% | 17.2% |
| 5079106 | 7573.1.1.1 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran | 0.58 | 44.0 | 3.19e-01 | 88.1% | 81.4% |
| 3480628 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 43.0 | 3.38e-01 | 84.7% | 37.0% |
| 3315233 | 109.4.1.651 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm_2 | 0.57 | 44.0 | 2.56e-01 | 89.8% | 20.2% |
| 3741080 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.57 | 45.0 | 3.39e-01 | 96.6% | 98.3% |
| 4001277 | 101.35.1.7 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Oxidored-like | 0.57 | 44.0 | 4.31e-01 | 86.4% | 79.7% |
| 4013696 | 611.3.1.1 ↗ | alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 | 0.57 | 43.0 | 3.75e-01 | 81.4% | 57.8% |
| 4112281 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.56 | 44.0 | 4.52e-01 | 91.5% | 94.5% |
| 4608944 | 2004.1.1.492 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C, ADDB_N, PF27467 | 0.55 | 47.0 | 2.68e-01 | 100.0% | 51.9% |
| 3622015 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.55 | 42.0 | 4.27e-01 | 84.7% | 85.0% |
| 3617454 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.55 | 41.0 | 4.32e-01 | 84.7% | 96.0% |
| 4297683 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.55 | 44.0 | 2.64e-01 | 88.1% | 74.5% |
| 3815026 | 604.1.1.148 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › TBCC_N | 0.55 | 44.0 | 3.89e-01 | 88.1% | 85.9% |
| 3283697 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.55 | 40.0 | 3.22e-01 | 78.0% | 96.5% |
| 5046694 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 41.0 | 4.26e-01 | 86.4% | 90.9% |
| 4405928 | 5086.1.1.196 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_YknX | 0.54 | 43.0 | 4.05e-01 | 86.4% | 71.4% |
| 4001770 | 4044.1.1.12 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › RH_dom | 0.53 | 40.0 | 3.49e-01 | 86.4% | 51.6% |
| 5039854 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.53 | 39.0 | 3.62e-01 | 78.0% | 84.0% |
| 3963162 | 109.32.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Alkylsulfatase SdsA1 linker domain › Alkylsulfatase SdsA1 linker domain | 0.53 | 38.0 | 3.51e-01 | 78.0% | 78.8% |
| 3995987 | 192.29.1.31 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › CRIC_ras_sig | 0.53 | 41.0 | 3.21e-01 | 89.8% | 66.2% |
| 3195509 | 7579.1.1.6 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 | 0.52 | 43.0 | 2.90e-01 | 100.0% | 60.4% |
| 3403626 | 4156.1.1.4 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C | 0.52 | 45.0 | 3.41e-01 | 100.0% | 54.0% |
| 3527434 | 6006.1.1.6 ↗ | extended segments › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › Voltage gated calcium channel IQ domain › PF27661 | 0.50 | 44.0 | 3.31e-01 | 100.0% | 56.1% |
D2
medium
residues 143-173
Domain cluster:
representative