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OM868076.1__UPT53105.1__X__00071

Bact-Vir

OM868076.1__UPT53105.1__X__00071

Identity

Accession:
OM868076 ↗
Kingdom:
phage

Quality

85.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Synechococcus_phage_Yong-M3-232

TaxID: 2928847

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-63
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4wzxA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.72 43.0 4.06e-01 90.5% 50.7%
4fxdA04 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.66 43.0 3.21e-01 90.5% 27.5%
3kr9A02 1.10.287.1890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 50.0 5.11e-01 84.1% 86.9%
3zheA02 1.25.40.760 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.64 49.0 3.47e-01 87.3% 25.6%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.64 46.0 3.61e-01 76.2% 56.5%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.63 43.0 4.21e-01 93.7% 64.7%
4j0eA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 52.0 3.58e-01 87.3% 75.2%
1vcsA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.62 45.0 3.93e-01 79.4% 63.7%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.61 46.0 4.24e-01 84.1% 68.2%
3kbtA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 44.0 2.95e-01 79.4% 19.0%
8b6jF01 1.10.287.20 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain 0.59 36.0 3.55e-01 93.7% 56.7%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 38.0 3.80e-01 79.4% 66.7%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.56 45.0 4.45e-01 88.9% 89.6%
4oe8C00 1.10.8.1170 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.52 47.0 4.21e-01 100.0% 79.3%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3389798 2006.1.4.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like 0.71 54.0 5.28e-01 82.5% 74.3%
5026959 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.66 52.0 5.05e-01 84.1% 78.6%
3788161 109.4.1.1379 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30880 0.65 51.0 3.07e-01 84.1% 29.2%
5070891 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.64 47.0 4.42e-01 82.5% 63.7%
4975245 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.61 48.0 4.29e-01 84.1% 69.3%
3887313 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.58 45.0 3.74e-01 85.7% 69.6%
3659915 192.7.1.45 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Na_sulph_symp 0.57 43.0 4.12e-01 84.1% 74.7%
2502908 7065.1.1.1 ↗ alpha arrays › Cytoplasmic metal binding domain of VIT1 › Cytoplasmic metal binding domain of VIT1 › Cytoplasmic metal binding domain of VIT1 › VIT1 0.53 42.0 4.10e-01 87.3% 95.8%