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OM868077.1__UPT53113.1__X__00004

Bact-Vir

OM868077.1__UPT53113.1__X__00004

Identity

Accession:
OM868077 ↗
Kingdom:
phage

Quality

63.4 mean pLDDT

Taxonomy

Loebvirae› Hofneiviricota› Faserviricetes› Tubulavirales› Inoviridae› Synechococcus_phage_Yong-M4-251

TaxID: 2928850

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-154_174-207
PDB
D2 high residues 210-275
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.71 51.0 5.52e-01 100.0% 92.6%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 49.0 5.51e-01 92.4% 100.0%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.69 46.0 5.03e-01 100.0% 88.5%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 49.0 5.30e-01 100.0% 96.2%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 52.0 4.54e-01 100.0% 56.1%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 52.0 5.31e-01 98.5% 86.2%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 51.0 5.08e-01 98.5% 82.4%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 4.45e-01 100.0% 67.1%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 51.0 5.39e-01 100.0% 96.6%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 4.99e-01 98.5% 98.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 44.0 4.28e-01 100.0% 64.4%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 52.0 5.40e-01 98.5% 98.3%
1q57G01 2.20.25.180 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.64 38.0 3.76e-01 92.4% 54.8%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 44.0 4.71e-01 100.0% 87.5%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 51.0 4.83e-01 100.0% 72.8%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 50.0 5.20e-01 98.5% 93.5%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 49.0 5.21e-01 98.5% 98.3%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.62 44.0 4.81e-01 98.5% 98.0%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 49.0 4.86e-01 100.0% 81.4%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 42.0 3.98e-01 100.0% 58.7%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 48.0 5.11e-01 97.0% 98.3%
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.61 41.0 4.43e-01 100.0% 82.5%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 47.0 4.97e-01 93.9% 100.0%
3i35A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 47.0 4.96e-01 98.5% 98.2%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 48.0 4.67e-01 100.0% 78.7%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 45.0 4.33e-01 100.0% 70.9%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 42.0 3.70e-01 100.0% 49.0%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 47.0 4.84e-01 100.0% 95.1%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 45.0 4.60e-01 100.0% 84.6%
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.58 39.0 4.42e-01 81.8% 100.0%
1vk8A00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 50.0 4.51e-01 97.0% 81.7%
5koxA02 3.30.70.2450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 49.0 4.51e-01 97.0% 94.2%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 49.0 4.71e-01 98.5% 83.3%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 43.0 3.83e-01 100.0% 56.2%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 46.0 4.70e-01 100.0% 96.9%
4kr6A01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.53 45.0 3.34e-01 93.9% 39.8%
1h3zA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 3.73e-01 100.0% 56.5%
5yk4A04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.52 37.0 2.95e-01 75.8% 43.4%
ECOD (82)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3483363 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 53.0 5.34e-01 97.0% 80.0%
3537417 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 46.0 5.24e-01 100.0% 97.8%
3340900 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 48.0 4.85e-01 100.0% 72.3%
3475965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 46.0 5.29e-01 98.5% 100.0%
3828348 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 48.0 4.83e-01 100.0% 72.3%
3359784 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.69 47.0 4.77e-01 100.0% 72.3%
3619813 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.69 48.0 3.97e-01 100.0% 41.7%
3449268 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 48.0 4.45e-01 100.0% 57.6%
3669492 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.68 46.0 3.66e-01 100.0% 33.6%
3356591 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 48.0 4.25e-01 100.0% 51.6%
3830763 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.68 46.0 4.35e-01 100.0% 58.7%
3333322 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 46.0 3.67e-01 100.0% 34.8%
3877478 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 47.0 4.07e-01 100.0% 48.0%
3315100 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 46.0 4.64e-01 100.0% 72.3%
3313119 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 46.0 4.33e-01 100.0% 58.7%
3663761 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 46.0 3.95e-01 100.0% 44.8%
3835464 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 46.0 4.53e-01 100.0% 67.1%
3514970 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 47.0 4.28e-01 100.0% 54.4%
3256498 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 46.0 4.99e-01 100.0% 87.3%
3935130 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 48.0 5.11e-01 100.0% 90.9%
3429682 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 46.0 4.41e-01 100.0% 62.7%
3558926 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 46.0 4.18e-01 100.0% 53.3%
3671396 4.1.1.316 ↗ beta barrels › SH3 › SH3 › SH3 › PUB62-63_C 0.67 48.0 4.74e-01 100.0% 71.2%
3501699 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 47.0 4.41e-01 100.0% 61.3%
3629830 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 47.0 4.33e-01 100.0% 57.6%
3342793 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.66 47.0 3.36e-01 100.0% 25.8%
3547089 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 46.0 4.17e-01 100.0% 53.3%
3789233 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 52.0 5.23e-01 98.5% 86.2%
3931993 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 46.0 4.83e-01 100.0% 81.7%
3515495 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 46.0 4.13e-01 100.0% 51.6%
3883165 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 46.0 4.06e-01 100.0% 49.0%
3581143 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.66 46.0 4.63e-01 100.0% 73.8%
3815479 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 45.0 4.34e-01 100.0% 62.7%
4003171 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 52.0 4.90e-01 100.0% 71.2%
4146735 219.1.1.159 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6005 0.66 54.0 4.01e-01 100.0% 35.3%
3452043 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 46.0 3.68e-01 74.2% 79.3%
3416044 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 46.0 3.96e-01 100.0% 46.7%
4012096 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 52.0 4.37e-01 97.0% 51.8%
3633434 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 51.0 5.03e-01 98.5% 80.0%
3480822 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 45.0 4.99e-01 100.0% 96.0%
3928262 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 52.0 5.43e-01 100.0% 96.7%
4171510 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 51.0 4.82e-01 100.0% 71.2%
3395948 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.65 45.0 4.87e-01 100.0% 89.1%
3248395 4.1.1.232 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Tf2-1 0.65 56.0 5.46e-01 100.0% 86.7%
4055256 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 45.0 4.08e-01 100.0% 53.3%
3881111 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 45.0 4.06e-01 100.0% 53.3%
3665882 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.64 47.0 3.81e-01 100.0% 39.3%
3535268 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 44.0 3.96e-01 100.0% 50.5%
4269256 4.1.1.245 ↗ beta barrels › SH3 › SH3 › SH3 › SspH 0.64 43.0 4.55e-01 100.0% 78.3%
3879068 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 44.0 4.08e-01 100.0% 56.5%
3222195 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 51.0 5.14e-01 100.0% 89.2%
3211839 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 50.0 4.96e-01 98.5% 81.4%
3230520 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 45.0 4.06e-01 100.0% 54.4%
3849311 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 50.0 5.23e-01 100.0% 95.0%
3571064 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 45.0 4.17e-01 100.0% 58.8%
3759402 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 52.0 5.27e-01 100.0% 93.8%
3240192 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.63 50.0 4.84e-01 98.5% 77.3%
3511551 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 47.0 4.87e-01 100.0% 90.0%
3917464 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 50.0 5.12e-01 100.0% 90.8%
3846212 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.62 50.0 4.69e-01 98.5% 72.5%
4003123 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 50.0 5.07e-01 100.0% 90.8%
3507664 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 49.0 5.07e-01 97.0% 95.0%
3546762 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.61 49.0 4.85e-01 98.5% 82.9%
3842441 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 46.0 4.83e-01 93.9% 91.7%
3416133 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 48.0 4.64e-01 98.5% 77.3%
4265513 304.147.1.1 ↗ a+b two layers › Alpha-beta plaits › Tetrahydrodipicolinate acetyltransferase N-terminal domain › Tetrahydrodipicolinate acetyltransferase N-terminal domain › DapH_N 0.60 45.0 4.65e-01 97.0% 88.3%
3498357 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 48.0 4.79e-01 100.0% 84.3%
3241067 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 46.0 3.94e-01 100.0% 50.9%
3231704 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 46.0 4.71e-01 98.5% 87.7%
2717779 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.60 47.0 4.41e-01 95.5% 69.5%
3373298 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 52.0 3.56e-01 100.0% 58.7%
3486189 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.94e-01 100.0% 98.3%
3669494 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 49.0 3.76e-01 100.0% 40.7%
3763497 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.56 49.0 4.74e-01 98.5% 86.7%
3203654 601.16.1.12 ↗ alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › SH3_1 0.56 47.0 3.35e-01 100.0% 31.0%
3259985 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 38.0 3.54e-01 71.2% 92.9%
3281618 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.56 49.0 4.30e-01 100.0% 67.0%
3881121 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.52 46.0 4.01e-01 98.5% 85.0%
3251960 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.73e-01 86.4% 74.1%
3579502 220.1.1.46 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.50 44.0 3.45e-01 100.0% 71.7%
3592221 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 44.0 3.70e-01 100.0% 62.7%
3250350 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 39.0 3.65e-01 86.4% 76.5%