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OM868079.1__UPT53180.1__X__00055

Bact-Vir

OM868079.1__UPT53180.1__X__00055

Identity

Accession:
OM868079 ↗
Kingdom:
phage

Quality

76.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Synechococcus_phage_Yong-M4-211

TaxID: 2928849

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-88
PDB
Domain cluster: rep: OR820515.1__WRQ05482.1__X__00033__D1-81
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b6dB00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.80 47.0 5.50e-01 76.6% 80.7%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.71 34.0 3.12e-01 71.4% 34.0%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.69 46.0 4.14e-01 88.3% 50.0%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.64 33.0 3.16e-01 71.4% 41.8%
2y8tA03 2.10.70.70 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.61 33.0 3.77e-01 71.4% 72.7%
2el8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 38.0 3.64e-01 75.3% 56.0%
2ettA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 41.0 3.50e-01 87.0% 44.5%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.56 33.0 2.74e-01 90.9% 31.2%
7xlqD01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 41.0 3.47e-01 79.2% 96.1%
1oo0A00 3.30.1560.10 Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi 0.53 40.0 3.31e-01 81.8% 78.5%
1kyfA01 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.53 37.0 3.00e-01 71.4% 53.0%
3sluA02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 42.0 3.59e-01 92.2% 81.0%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.52 43.0 3.54e-01 92.2% 76.6%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.52 40.0 4.08e-01 81.8% 83.8%
3zl8A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.52 39.0 2.73e-01 77.9% 27.9%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.52 45.0 3.90e-01 96.1% 72.7%
3h51A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 32.0 2.67e-01 71.4% 33.8%
2k50A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 38.0 3.46e-01 77.9% 76.0%
5bncA02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.52 35.0 3.30e-01 81.8% 58.1%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.52 35.0 3.04e-01 97.4% 45.0%
4c23B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 34.0 2.44e-01 70.1% 27.4%
3n4fA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 34.0 2.95e-01 71.4% 63.8%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4285739 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.82 48.0 5.01e-01 72.7% 63.0%
3889754 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.82 48.0 5.49e-01 76.6% 76.7%
3923898 377.1.2.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger 0.80 48.0 4.78e-01 70.1% 58.7%
3549345 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.79 48.0 5.38e-01 70.1% 78.3%
3513068 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.79 48.0 5.28e-01 70.1% 73.8%
3865409 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.78 48.0 5.42e-01 70.1% 80.0%
3586741 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.78 47.0 5.15e-01 70.1% 72.3%
3804854 376.1.2.2 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.75 47.0 4.03e-01 81.8% 42.6%
3990333 376.1.2.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1 0.74 46.0 4.68e-01 70.1% 64.0%
8200 377.1.2.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP 0.74 50.0 4.37e-01 71.4% 78.6%
3394414 376.1.2.17 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › LIM+PET 0.73 49.0 3.89e-01 70.1% 37.2%
3741537 377.1.2.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger › zf-PARP 0.72 51.0 4.47e-01 72.7% 96.4%
3271441 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.70 46.0 5.28e-01 71.4% 92.7%
3518948 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.68 41.0 4.01e-01 76.6% 55.3%
4963795 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 50.0 5.10e-01 81.8% 84.0%
5048982 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 40.0 2.84e-01 71.4% 25.1%
4985543 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.59 40.0 3.36e-01 71.4% 65.1%
3436093 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 36.0 3.66e-01 76.6% 62.7%
3655368 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.58 35.0 3.59e-01 76.6% 61.3%
3475881 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 34.0 3.55e-01 71.4% 64.3%
4946616 512.1.1.2 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.56 38.0 3.65e-01 70.1% 62.2%
4000394 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 39.0 4.12e-01 72.7% 94.3%
3589823 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.56 37.0 3.90e-01 94.8% 80.0%
4334767 218.1.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.56 41.0 3.79e-01 76.6% 100.0%
1233328 4.1.1.116 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_14 0.54 38.0 3.23e-01 75.3% 43.8%
4017879 3385.1.1.0 ↗ beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 0.54 41.0 3.50e-01 80.5% 52.0%
5010248 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.54 36.0 3.64e-01 70.1% 71.2%
3293481 861.1.1.1 ↗ a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein › Mago_nashi 0.54 40.0 3.46e-01 80.5% 89.6%
3516347 861.1.1.1 ↗ a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein › Mago_nashi 0.53 40.0 3.26e-01 81.8% 81.9%
4939419 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.53 36.0 3.53e-01 70.1% 72.9%
4172287 4237.1.1.1 ↗ beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.53 39.0 3.19e-01 81.8% 52.1%
4676584 325.1.8.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein 0.53 36.0 3.92e-01 71.4% 98.5%
4451770 4237.1.1.1 ↗ beta barrels › FomD-like › FomD-like › FomD-like › DUF402 0.53 39.0 3.16e-01 81.8% 50.9%
4994776 218.1.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.53 38.0 3.59e-01 76.6% 89.5%
3470076 861.1.1.0 ↗ a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein 0.52 39.0 3.27e-01 80.5% 80.0%
3592295 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 36.0 2.86e-01 72.7% 39.4%
4595466 3572.1.1.2 ↗ a+b complex topology › Cascade subunit Csa5 › Cascade subunit Csa5 › Cascade subunit Csa5 › Cas_Csa5 0.52 38.0 3.29e-01 96.1% 48.8%
4597606 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 37.0 2.94e-01 76.6% 52.1%
3988798 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 30.0 2.83e-01 71.4% 48.9%
1582440 218.1.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.51 35.0 3.10e-01 71.4% 71.7%
3927710 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.50 41.0 3.29e-01 93.5% 86.7%
4872607 223.1.1.12 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 0.50 34.0 3.14e-01 100.0% 50.5%
5075588 512.1.1.0 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.50 36.0 3.43e-01 76.6% 64.4%