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OM868079.1__UPT53197.1__X__00072

Bact-Vir

OM868079.1__UPT53197.1__X__00072

Identity

Accession:
OM868079 ↗
Kingdom:
phage

Quality

92.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 83-167
PDB
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.70 61.0 5.96e-01 96.5% 92.4%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.69 59.0 6.10e-01 96.5% 100.0%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 56.0 4.49e-01 88.2% 71.7%
4xhyA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 56.0 4.50e-01 88.2% 72.0%
2v31A01 2.40.30.180 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Ubiquitin-activating enzyme E1, FCCH domain 0.68 58.0 5.61e-01 97.6% 82.5%
2ecuA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 56.0 4.61e-01 88.2% 72.5%
5tr9A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.67 58.0 5.58e-01 96.5% 96.9%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.66 57.0 5.39e-01 96.5% 91.3%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.66 57.0 5.46e-01 96.5% 96.0%
2nv4A00 2.40.30.70 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like 0.66 58.0 5.06e-01 98.8% 94.7%
4kktA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.65 57.0 5.32e-01 97.6% 92.4%
1a8pA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 56.0 5.42e-01 96.5% 97.9%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.65 57.0 5.33e-01 96.5% 84.6%
5ylyA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 55.0 5.08e-01 96.5% 97.3%
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.64 57.0 5.27e-01 100.0% 99.1%
3dclA02 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 56.0 5.47e-01 96.5% 92.3%
1yloE02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.64 54.0 5.51e-01 95.3% 100.0%
1xqbA01 2.40.30.70 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like 0.63 56.0 5.12e-01 97.6% 86.2%
3jb9H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 44.0 4.61e-01 72.9% 97.4%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 39.0 4.42e-01 71.8% 84.4%
3zn6A02 2.60.40.3410 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 51.0 5.07e-01 92.9% 97.7%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 51.0 4.82e-01 96.5% 95.3%
3ic8A01 3.40.30.110 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.60 47.0 3.72e-01 85.9% 76.8%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.59 45.0 3.40e-01 96.5% 31.4%
5hmaA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 42.0 4.19e-01 87.1% 75.9%
1v0fB03 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.57 49.0 4.99e-01 97.6% 97.6%
1o5uA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 34.0 3.44e-01 96.5% 58.0%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 39.0 3.78e-01 75.3% 64.6%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 3.50e-01 75.3% 52.8%
1imhC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 49.0 4.57e-01 98.8% 84.0%
3h6zA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 39.0 3.60e-01 75.3% 61.6%
2vrsA03 2.60.90.40 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.54 45.0 4.02e-01 95.3% 71.2%
1ifrA00 2.60.40.1260 Mainly Beta › Sandwich › Immunoglobulin-like › Lamin Tail domain 0.54 47.0 4.36e-01 100.0% 89.4%
1dceA02 2.60.40.1130 Mainly Beta › Sandwich › Immunoglobulin-like › Rab geranylgeranyltransferase alpha-subunit, insert domain 0.54 43.0 4.11e-01 89.4% 99.0%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 42.0 4.07e-01 91.8% 77.1%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.54 45.0 3.91e-01 95.3% 60.1%
4pqqA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 44.0 3.67e-01 94.1% 89.1%
2qbuA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.52 34.0 3.27e-01 97.6% 58.3%
1sq2N00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 44.0 4.07e-01 98.8% 83.0%
2q7nA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 45.0 4.34e-01 100.0% 87.8%
2wllA02 2.60.40.1400 Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 0.51 41.0 3.56e-01 92.9% 65.5%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.70e-01 75.3% 77.1%
2kd7A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 41.0 3.46e-01 92.9% 90.6%
2jjsC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 40.0 3.74e-01 91.8% 85.2%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4965596 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.78 60.0 6.03e-01 81.2% 87.1%
5017556 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.76 58.0 5.86e-01 80.0% 85.9%
5008430 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.76 58.0 5.85e-01 80.0% 85.9%
3387360 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.76 60.0 6.03e-01 97.6% 84.7%
4951403 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.76 59.0 5.84e-01 82.4% 83.3%
3602341 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.76 59.0 5.82e-01 82.4% 83.3%
3227251 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.76 68.0 6.06e-01 96.5% 82.6%
4966449 1.1.13.72 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CBS 0.75 59.0 5.72e-01 83.5% 80.0%
3355171 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.75 66.0 5.82e-01 95.3% 97.5%
5018991 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.75 59.0 5.81e-01 83.5% 84.4%
4403870 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.74 58.0 5.62e-01 97.6% 74.7%
3224728 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 64.0 5.76e-01 97.6% 88.7%
3969656 1.1.7.24 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.71 61.0 6.05e-01 95.3% 98.9%
4230122 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.71 55.0 5.26e-01 97.6% 72.0%
5056905 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.70 60.0 5.98e-01 95.3% 98.9%
5022659 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.70 55.0 5.84e-01 83.5% 94.7%
3953489 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.69 61.0 5.79e-01 97.6% 97.0%
4453032 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.69 61.0 5.76e-01 96.5% 92.0%
4381190 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.69 60.0 5.60e-01 96.5% 88.6%
3596642 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 56.0 5.67e-01 97.6% 88.2%
5011662 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 60.0 5.00e-01 96.5% 91.3%
3287262 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.69 60.0 5.59e-01 96.5% 87.6%
5023511 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.69 60.0 5.46e-01 97.6% 98.3%
3708890 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.69 60.0 5.62e-01 97.6% 96.2%
4946423 1.1.7.138 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › NAD_binding_1 0.68 60.0 5.71e-01 97.6% 91.0%
3997045 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.68 59.0 5.77e-01 97.6% 98.9%
2389026 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.68 59.0 5.65e-01 97.6% 94.9%
3945286 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 59.0 5.49e-01 96.5% 90.5%
4930890 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 54.0 5.71e-01 92.9% 100.0%
4207197 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 58.0 5.50e-01 96.5% 95.0%
3613165 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 57.0 5.37e-01 96.5% 95.2%
5000971 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 58.0 5.72e-01 96.5% 96.7%
3944005 1.1.7.87 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.66 59.0 5.11e-01 100.0% 72.9%
4218574 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 57.0 5.57e-01 96.5% 98.9%
3614391 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 57.0 5.44e-01 96.5% 96.0%
3395962 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 56.0 4.73e-01 96.5% 70.7%
4958674 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.66 57.0 5.40e-01 96.5% 91.0%
4963784 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.66 57.0 5.45e-01 97.6% 96.0%
4061526 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.65 56.0 5.38e-01 96.5% 95.0%
3452625 1.1.7.69 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.65 56.0 5.35e-01 96.5% 84.0%
3178145 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 55.0 4.62e-01 96.5% 70.7%
4510320 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.64 55.0 5.44e-01 95.3% 95.6%
4452870 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.64 57.0 5.58e-01 97.6% 91.1%
4173804 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 55.0 5.41e-01 97.6% 96.7%
3842233 1.1.7.69 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.63 55.0 5.43e-01 96.5% 93.3%
3387846 1.1.7.10 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.63 57.0 5.05e-01 100.0% 97.5%
3572941 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.62 53.0 5.02e-01 97.6% 96.2%
4940909 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 51.0 5.14e-01 97.6% 98.8%
3761310 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 51.0 4.66e-01 98.8% 79.2%
3260252 11.1.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.59 49.0 4.77e-01 98.8% 83.2%
1030933 1.1.7.29 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › End_beta_barrel 0.57 50.0 4.97e-01 97.6% 95.5%
4982421 10.12.1.27 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_3 0.57 34.0 3.57e-01 96.5% 64.6%
3593865 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 49.0 4.47e-01 98.8% 81.7%
3254695 11.1.1.802 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8390 0.56 47.0 4.55e-01 98.8% 84.2%
3259326 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 47.0 4.52e-01 98.8% 91.0%
3248639 11.1.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.54 46.0 4.43e-01 98.8% 85.0%
1146571 5092.1.1.8 beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins › TAdV_Fibre-like_head 0.54 45.0 3.91e-01 95.3% 60.1%
3525543 11.1.1.991 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28112 0.53 46.0 4.24e-01 98.8% 90.9%
3256728 11.1.1.843 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.53 45.0 3.86e-01 98.8% 71.0%
3263949 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 43.0 4.22e-01 98.8% 84.2%
1937397 1137.1.1.1 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.52 34.0 3.25e-01 97.6% 57.7%
4615943 10.32.1.173 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Muskelin_N 0.52 43.0 3.49e-01 94.1% 80.0%
5020572 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 4.25e-01 98.8% 93.3%
3922431 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 44.0 4.14e-01 97.6% 94.3%
3543919 10.10.1.1 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.51 40.0 3.49e-01 88.2% 93.6%
5039643 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 42.0 3.80e-01 92.9% 90.8%
5039715 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 41.0 4.16e-01 97.6% 91.8%
D2 high residues 188-293
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26209.2 best Phage_phiTE_241_C 28.6 1.60e-06 83.0% 74.4%
D3 medium residues 7-80
PDB
Domain cluster: representative