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OM868079.1__UPT53200.1__X__00075

Bact-Vir

OM868079.1__UPT53200.1__X__00075

Identity

Accession:
OM868079 ↗
Kingdom:
phage

Quality

83.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Synechococcus_phage_Yong-M4-211

TaxID: 2928849

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 38-100
PDB
Domain cluster: rep: KP137437.1__AJA73301.1__1152AP2_16__00016__D45-106
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23812.2 best Phage_TAC_18 33.4 5.20e-08 92.1% 71.2%
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.73 59.0 5.79e-01 96.8% 81.2%
2kiwA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.69 61.0 5.54e-01 100.0% 73.3%
2cqnA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.69 59.0 5.61e-01 100.0% 84.4%
1f0jA00 1.10.1300.10 Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain 0.67 59.0 3.71e-01 100.0% 26.2%
2hszA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.67 57.0 5.42e-01 93.7% 81.3%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.67 58.0 5.12e-01 100.0% 71.3%
2zm5B01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 47.0 3.20e-01 74.6% 32.2%
3crmA02 1.10.287.890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.66 43.0 3.91e-01 77.8% 50.0%
1t9xA05 1.20.1640.10 Mainly Alpha › Up-down Bundle › Multidrug efflux transporter AcrB transmembrane fold › Multidrug efflux transporter AcrB transmembrane domain 0.65 54.0 3.83e-01 100.0% 47.3%
2l2oA00 1.10.10.1540 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Costar domain 0.64 53.0 4.89e-01 96.8% 94.1%
1xvhB00 1.20.120.1850 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Ebh helix bundles repeating unit (S and A modules) 0.64 39.0 3.19e-01 82.5% 33.1%
4pjjA04 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.64 41.0 3.29e-01 74.6% 33.6%
1g2rA00 3.30.1230.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like 0.62 52.0 4.63e-01 95.2% 64.9%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.62 53.0 5.19e-01 92.1% 98.5%
7wboA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.62 46.0 3.37e-01 81.0% 29.4%
2bl0C01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.62 46.0 4.42e-01 81.0% 78.7%
1v4aA03 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.61 43.0 3.24e-01 74.6% 56.2%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 51.0 4.74e-01 95.2% 89.7%
2vxdA00 1.10.10.2100 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Nucleophosmin, C-terminal domain 0.59 45.0 4.71e-01 88.9% 98.1%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 50.0 4.64e-01 95.2% 90.1%
3d6kA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 51.0 3.83e-01 100.0% 91.3%
3op7A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.57 38.0 2.73e-01 88.9% 21.0%
2hoxA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.57 40.0 2.86e-01 85.7% 22.9%
1oksA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.57 37.0 4.03e-01 76.2% 81.1%
1wdzA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.56 38.0 2.60e-01 85.7% 19.5%
2el7A02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.56 43.0 3.79e-01 84.1% 85.1%
2janA02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.56 44.0 3.88e-01 90.5% 79.2%
2j0wA02 1.20.120.1320 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartokinase, catalytic domain 0.56 42.0 3.79e-01 84.1% 66.7%
1bvp101 1.10.250.10 Mainly Alpha › Orthogonal Bundle › Bluetongue Virus 10, subunit 1; domain 1 › Bluetongue Virus 10, subunit 1, domain 1 0.56 42.0 3.43e-01 82.5% 54.2%
4fd4A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 45.0 3.18e-01 93.7% 72.2%
4za3A01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.54 41.0 3.17e-01 87.3% 94.5%
6j9eD01 1.10.274.100 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 0.54 45.0 3.65e-01 95.2% 59.8%
2elcA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.54 38.0 3.73e-01 88.9% 68.7%
6zhhA01 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.53 42.0 3.20e-01 92.1% 97.2%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.52 40.0 3.97e-01 81.0% 81.8%
2qkdA04 2.60.120.1040 Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain 0.52 41.0 3.39e-01 88.9% 48.0%
2qsbA00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.51 40.0 3.69e-01 85.7% 90.6%
1ma1A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.51 38.0 3.83e-01 92.1% 79.7%
4heoA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.50 34.0 3.64e-01 82.5% 81.8%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4025261 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 61.0 5.15e-01 98.4% 69.1%
3515490 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.71 61.0 5.78e-01 96.8% 86.7%
4609007 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.70 50.0 5.40e-01 92.1% 98.0%
4945179 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 60.0 4.60e-01 98.4% 53.8%
None — 0.69 48.0 3.20e-01 74.6% 28.2%
3236724 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 57.0 4.89e-01 98.4% 65.7%
3837701 101.1.17.2 ↗ alpha arrays › HTH › HTH › FF domain › FF 0.67 58.0 5.77e-01 100.0% 96.9%
3686953 101.1.17.2 ↗ alpha arrays › HTH › HTH › FF domain › FF 0.67 58.0 5.63e-01 100.0% 92.9%
3733392 101.1.2.166 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM6_C 0.66 56.0 4.69e-01 98.4% 62.6%
4586962 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.66 56.0 4.65e-01 98.4% 59.2%
3169408 101.1.17.2 ↗ alpha arrays › HTH › HTH › FF domain › FF 0.66 56.0 5.49e-01 100.0% 94.3%
3816224 101.1.17.2 ↗ alpha arrays › HTH › HTH › FF domain › FF 0.65 55.0 5.40e-01 100.0% 90.0%
4034208 1075.3.1.4 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1+BPD_transp_1_N 0.65 54.0 3.57e-01 100.0% 67.2%
143797 101.1.2.149 ↗ alpha arrays › HTH › HTH › winged helix domain › Costars 0.64 53.0 4.96e-01 96.8% 98.8%
3918763 101.1.1.117 ↗ alpha arrays › HTH › HTH › Three-helical HTH › CHDCT2 0.63 48.0 4.18e-01 84.1% 68.0%
4523250 108.1.1.74 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7+EF-hand_8 0.62 46.0 4.15e-01 81.0% 63.3%
3251599 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 51.0 4.95e-01 100.0% 85.3%
3913925 570.1.1.1 ↗ alpha arrays › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › SecA_PP_bind 0.61 51.0 4.22e-01 100.0% 62.4%
3916642 192.2.1.56 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › KIF9 0.61 42.0 3.08e-01 100.0% 30.0%
3410657 108.1.1.66 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_PLCG1 0.60 47.0 4.28e-01 85.7% 85.9%
3592824 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 53.0 4.91e-01 100.0% 97.5%
5057946 3960.1.1.0 ↗ alpha arrays › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain 0.58 42.0 3.61e-01 77.8% 48.6%
3505456 5067.1.1.16 ↗ alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MgtC 0.58 51.0 4.02e-01 100.0% 66.4%
3545682 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.57 48.0 3.18e-01 100.0% 23.4%
3594658 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.56 45.0 3.22e-01 93.7% 51.9%
4932281 606.1.1.0 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.56 45.0 3.98e-01 93.7% 58.9%
4625844 101.1.2.20 ↗ alpha arrays › HTH › HTH › winged helix domain › Arg_repressor 0.56 47.0 4.63e-01 100.0% 97.1%
3866339 109.62.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › AFF4 C-terminal homology domain › AFF4 C-terminal homology domain › AFF4_CHD 0.56 46.0 3.10e-01 88.9% 33.6%
3711589 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.55 41.0 3.88e-01 79.4% 86.7%
4062783 190.1.1.3 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.55 37.0 3.62e-01 71.4% 95.7%
3774441 109.4.1.846 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Stereocilin 0.54 48.0 2.61e-01 100.0% 44.1%
3166324 148.1.3.334 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF27180 0.54 41.0 3.34e-01 82.5% 45.0%
4462288 601.7.1.6 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › GlnD_UR_UTase 0.54 45.0 3.40e-01 92.1% 40.7%
3688849 109.1.1.35 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › PF25907 0.54 47.0 3.45e-01 100.0% 89.1%
3622196 604.1.1.63 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_SESTD1 0.51 44.0 3.52e-01 93.7% 85.0%
3272680 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.50 39.0 4.00e-01 95.2% 98.3%
3290858 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 41.0 3.61e-01 98.4% 81.9%
4942190 633.12.1.1 ↗ alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 0.50 42.0 3.79e-01 95.2% 88.6%