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OM868079.1__UPT53206.1__X__00081

Bact-Vir

OM868079.1__UPT53206.1__X__00081

Identity

Accession:
OM868079 ↗
Kingdom:
phage

Quality

90.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 44-122
PDB
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kz4A00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.82 76.0 6.69e-01 100.0% 83.9%
2pp6A02 2.40.10.210 Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) 0.81 59.0 6.53e-01 97.5% 93.7%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 41.0 4.60e-01 94.9% 69.4%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 41.0 4.49e-01 97.5% 66.2%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.69 60.0 5.60e-01 94.9% 91.8%
3d37B01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.68 63.0 4.79e-01 100.0% 50.0%
2pmzB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.68 49.0 4.25e-01 75.9% 98.4%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.68 63.0 5.89e-01 100.0% 94.7%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.66 59.0 4.70e-01 100.0% 75.0%
1y12B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.65 58.0 4.62e-01 98.7% 74.4%
3f3zA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 50.0 5.00e-01 92.4% 82.9%
3lidA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 49.0 4.19e-01 86.1% 81.3%
3p26B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 56.0 5.17e-01 100.0% 79.2%
1ddgA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 51.0 4.53e-01 96.2% 62.3%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 54.0 4.48e-01 100.0% 72.8%
3mcaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 55.0 4.79e-01 98.7% 81.4%
4mmnA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.61 50.0 4.12e-01 88.6% 72.3%
1blxA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 52.0 4.93e-01 93.7% 87.0%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 42.0 4.04e-01 91.1% 62.5%
1azzA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 52.0 4.59e-01 100.0% 74.8%
5gxuB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 48.0 4.18e-01 94.9% 59.0%
4labA00 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.58 41.0 3.14e-01 88.6% 31.0%
3q0bX00 2.30.280.10 Mainly Beta › Roll › PUA domain-like › SRA-YDG 0.58 51.0 4.20e-01 100.0% 68.9%
1fp5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 47.0 4.41e-01 92.4% 81.0%
2gysA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 45.0 4.40e-01 93.7% 79.1%
4uhvA01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.56 48.0 3.70e-01 100.0% 49.7%
2apoA03 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 39.0 3.74e-01 84.8% 63.0%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 31.0 3.25e-01 97.5% 58.6%
2fbjH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 42.0 4.33e-01 91.1% 90.4%
3i87A02 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.55 45.0 4.25e-01 92.4% 80.6%
6mv2A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 46.0 4.23e-01 91.1% 77.5%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 32.0 3.34e-01 100.0% 61.3%
2v9kA04 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 43.0 3.89e-01 87.3% 73.4%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.54 45.0 4.01e-01 100.0% 68.8%
1qs1A01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.53 41.0 3.08e-01 83.5% 98.5%
1g3pA02 3.90.450.1 Alpha Beta › Alpha-Beta Complex › Minor Coat Protein; domain 2 › Minor Coat Protein; Domain 2 0.53 36.0 3.38e-01 70.9% 67.3%
6ue9L02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 3.73e-01 91.1% 59.8%
3edpA02 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.52 38.0 3.13e-01 77.2% 85.6%
3l5zA01 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.52 43.0 3.68e-01 94.9% 86.0%
2ikkA00 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.52 44.0 3.66e-01 96.2% 81.5%
2pkhA01 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.52 43.0 3.71e-01 94.9% 88.5%
5af7B02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.52 43.0 3.93e-01 97.5% 92.1%
2p3yA03 2.60.40.1610 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF1254 0.51 42.0 3.46e-01 91.1% 81.1%
3f8lB00 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.51 42.0 3.35e-01 91.1% 76.0%
2k8qA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 43.0 3.66e-01 94.9% 61.2%
2ausC02 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.51 40.0 3.04e-01 86.1% 41.7%
2nwiB00 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.51 42.0 3.47e-01 93.7% 71.2%
3eetA02 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.51 43.0 3.45e-01 96.2% 72.6%
3ix9A00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.50 43.0 3.38e-01 93.7% 92.8%
1d5aA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.50 37.0 3.06e-01 78.5% 42.4%
2p3hA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.50 37.0 3.52e-01 79.7% 98.0%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3975275 1.1.13.15 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Gifsy-2 0.78 63.0 5.85e-01 97.5% 70.5%
3058418 1.1.13.2 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_attach 0.74 67.0 6.15e-01 100.0% 76.5%
4032883 1.1.13.3 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.73 68.0 6.11e-01 100.0% 87.6%
5038876 1.1.13.2 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_attach 0.73 67.0 6.34e-01 97.5% 91.1%
4395103 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 53.0 5.15e-01 97.5% 68.9%
4883825 1.1.13.20 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.72 66.0 6.28e-01 100.0% 88.0%
5057186 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 54.0 5.20e-01 96.2% 70.0%
3321067 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.71 51.0 4.89e-01 91.1% 65.6%
3289340 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 56.0 5.59e-01 93.7% 83.7%
4260208 1.1.13.62 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF27197 0.71 63.0 5.73e-01 97.5% 99.0%
4284764 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.71 40.0 4.34e-01 96.2% 67.7%
3511358 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.70 64.0 5.93e-01 100.0% 97.0%
4072524 1.1.7.88 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.70 58.0 5.12e-01 96.2% 63.6%
3909822 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 63.0 5.58e-01 98.7% 87.3%
2642578 1.1.13.3 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.69 64.0 5.67e-01 100.0% 85.5%
5012268 1.1.7.5 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding 0.68 51.0 4.82e-01 98.7% 66.3%
4030357 1.1.7.25 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN 0.66 52.0 5.00e-01 97.5% 74.4%
4382401 1.1.7.100 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PGBA_N 0.66 48.0 4.68e-01 93.7% 70.6%
5034906 205.1.1.16 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 0.66 52.0 4.17e-01 84.8% 77.8%
4929752 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.66 59.0 4.70e-01 98.7% 76.1%
3969384 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.65 58.0 4.61e-01 98.7% 77.5%
4094235 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.65 59.0 5.02e-01 98.7% 64.0%
5002753 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.65 60.0 5.87e-01 100.0% 97.6%
4172447 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 49.0 5.06e-01 94.9% 85.3%
4969148 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 50.0 4.70e-01 89.9% 68.4%
3264744 1.1.5.23 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.65 58.0 4.44e-01 98.7% 74.9%
4929587 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.64 57.0 5.46e-01 97.5% 96.7%
3389361 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 53.0 5.03e-01 100.0% 76.8%
4259247 1.11.1.1 beta barrels › cradle loop barrel › Photosystem II accessory factor Psb28 › Photosystem II accessory factor Psb28 › Psb28 0.64 56.0 5.24e-01 98.7% 82.8%
3944430 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.64 58.0 5.26e-01 100.0% 88.6%
3510228 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.64 55.0 4.17e-01 100.0% 97.6%
2595159 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.64 56.0 4.46e-01 100.0% 71.7%
4036849 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.63 56.0 4.72e-01 98.7% 63.2%
184486 1.1.13.26 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › GpP-like_1st 0.63 52.0 5.23e-01 97.5% 88.9%
5036802 205.1.1.1 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4 0.63 48.0 4.03e-01 92.4% 47.1%
4888726 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.63 56.0 4.40e-01 100.0% 73.8%
3967003 1.1.13.35 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_TTP_11 0.62 55.0 4.59e-01 100.0% 85.0%
3764256 11.1.1.108 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.62 48.0 4.50e-01 91.1% 67.0%
4969147 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 51.0 4.72e-01 94.9% 71.0%
3267253 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 46.0 4.34e-01 92.4% 65.3%
3256920 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 53.0 4.60e-01 100.0% 77.6%
4260084 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.60 51.0 4.47e-01 98.7% 62.5%
3353869 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.60 50.0 4.89e-01 91.1% 96.5%
3798031 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.60 48.0 4.13e-01 89.9% 80.0%
4538400 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.59 52.0 4.43e-01 98.7% 64.6%
4197562 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.56 41.0 2.99e-01 88.6% 25.7%
3786051 12.1.1.34 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro38C2 0.56 47.0 4.12e-01 93.7% 95.8%
3253616 11.1.1.843 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.56 49.0 3.79e-01 100.0% 67.6%
4272494 11.1.1.96 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.56 44.0 3.88e-01 91.1% 56.8%
3262493 11.1.1.843 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.55 45.0 3.92e-01 92.4% 57.6%
4444321 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.55 47.0 3.54e-01 100.0% 40.0%
4974179 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.54 39.0 3.50e-01 79.7% 54.5%
5001314 304.102.1.4 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.54 43.0 3.06e-01 87.3% 29.8%
4077036 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.53 43.0 3.14e-01 88.6% 32.4%
4557453 304.102.1.9 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N, DKCLD, TruB_C_2, Pus10_C 0.53 43.0 3.07e-01 88.6% 29.8%
3428351 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.53 43.0 3.26e-01 88.6% 38.5%
4928543 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.53 43.0 4.13e-01 91.1% 88.4%
4275176 304.102.1.5 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 0.53 42.0 3.08e-01 87.3% 31.7%
5019301 304.102.1.13 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 0.53 43.0 3.04e-01 88.6% 29.2%
4591715 304.102.1.5 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 0.53 42.0 3.05e-01 87.3% 31.5%
3198907 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 4.35e-01 94.9% 92.9%
5058386 304.102.1.4 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.52 41.0 3.18e-01 87.3% 38.4%
3260117 331.10.1.1 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox 0.51 41.0 2.76e-01 89.9% 46.9%
3946733 814.1.1.3 a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase › UTRA 0.51 43.0 3.47e-01 94.9% 73.1%
5036917 304.102.1.13 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 0.51 40.0 3.29e-01 87.3% 46.0%
5033279 304.102.1.4 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.51 39.0 2.85e-01 86.1% 38.3%
3263957 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 40.0 3.84e-01 96.2% 73.7%