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OM868081.1__UPT53304.1__X__00034

Bact-Vir

OM868081.1__UPT53304.1__X__00034

Identity

Accession:
OM868081 ↗
Kingdom:
phage

Quality

89.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Synechococcus_phage_Yong-L2-223

TaxID: 2928845

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-57
PDB
Domain cluster: rep: MW388005.1__QQO39020.1__X__00046__D8-66
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01471.24 best PG_binding_1 67.4 1.40e-18 96.4% 89.5%
D2 high residues 84-231
PDB
Domain cluster: rep: RifSed_csp2_10ft_3_scaffold_6_prodigal-single.1__X__X__00069__D90-185_575-630
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13539.12 best Peptidase_M15_4 29.8 1.00e-06 43.9% 97.1%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vhhA00 3.30.1380.10 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › 0.68 57.0 5.58e-01 100.0% 83.4%
3bm7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 33.0 3.79e-01 70.3% 77.4%
2bbeA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 33.0 3.78e-01 95.3% 80.6%
1f5aA01 3.30.70.590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain 0.54 34.0 3.90e-01 98.0% 86.9%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4584034 307.1.1.1 ↗ a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › HH_signal 0.67 57.0 5.44e-01 100.0% 78.1%
3556189 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.54 28.0 3.38e-01 91.9% 76.7%
3726073 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.52 40.0 4.14e-01 88.5% 87.4%