Back to structures

OM868081.1__UPT53352.1__X__00082

Bact-Vir

OM868081.1__UPT53352.1__X__00082

Identity

Accession:
OM868081 ↗
Kingdom:
phage

Quality

77.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-59
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xioA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.94 69.0 4.38e-01 76.9% 19.4%
4etrB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.94 69.0 5.03e-01 76.9% 34.4%
1o3uA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.94 67.0 4.93e-01 75.0% 35.0%
2gw1A02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.93 86.0 5.01e-01 100.0% 14.4%
3rkoF01 1.20.120.1200 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ 0.92 68.0 4.61e-01 76.9% 26.2%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.91 83.0 6.65e-01 100.0% 68.0%
3cqcB01 1.20.58.1380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.91 81.0 6.58e-01 96.2% 56.7%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.90 65.0 5.30e-01 76.9% 46.2%
2ib0A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.87 80.0 5.76e-01 100.0% 87.4%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.86 62.0 3.94e-01 76.9% 17.8%
1j30A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.86 68.0 4.82e-01 84.6% 42.6%
3pwfA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.85 62.0 4.52e-01 76.9% 35.1%
2fzfA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.85 78.0 5.47e-01 100.0% 88.0%
6xssA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.84 71.0 6.42e-01 98.1% 69.6%
1u89A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.84 74.0 5.41e-01 100.0% 56.1%
7qihA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.84 71.0 5.69e-01 100.0% 48.5%
7yb9A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.84 71.0 4.58e-01 92.3% 22.0%
4r42A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.84 74.0 5.00e-01 100.0% 77.5%
1td6A01 1.20.1480.10 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › hypothetical protein mp506/mpn330, domain 1 0.83 74.0 5.90e-01 100.0% 53.9%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.83 74.0 6.54e-01 100.0% 88.0%
2vkjA00 1.20.58.2030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.83 75.0 5.86e-01 100.0% 49.1%
3rm5B02 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.83 62.0 3.95e-01 78.8% 18.3%
4gywA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.82 69.0 5.35e-01 98.1% 43.2%
2cfuA02 1.25.40.880 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Alkyl sulfatase, dimerisation domain 0.81 69.0 4.98e-01 94.2% 94.3%
2xgsB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.80 68.0 6.03e-01 92.3% 65.8%
2vgxB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.80 70.0 5.08e-01 100.0% 38.6%
2y8nA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.79 70.0 3.79e-01 96.2% 26.5%
1r9dA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.79 72.0 3.90e-01 98.1% 24.6%
3fseB02 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.79 70.0 5.05e-01 100.0% 88.2%
5jj6B01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.79 69.0 5.57e-01 100.0% 52.1%
6vxcA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.78 70.0 3.80e-01 96.2% 24.6%
5a0uA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.78 70.0 3.84e-01 98.1% 24.8%
4g1tA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.78 70.0 6.67e-01 100.0% 85.2%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.78 57.0 4.74e-01 78.8% 77.8%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.76 65.0 6.10e-01 94.2% 83.9%
2a9uA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.76 67.0 5.00e-01 98.1% 57.1%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.76 64.0 5.01e-01 100.0% 63.3%
2lqgA00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.76 64.0 4.81e-01 100.0% 68.8%
7tj4A01 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.75 60.0 4.52e-01 92.3% 37.5%
2fbnA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.75 66.0 4.73e-01 100.0% 34.0%
5ffdA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.74 64.0 4.76e-01 100.0% 89.8%
4u04B01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.74 65.0 5.39e-01 98.1% 56.8%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 63.0 5.13e-01 100.0% 89.4%
2q00B00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.73 62.0 4.69e-01 94.2% 77.0%
3ph0C00 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.69 55.0 5.52e-01 96.2% 88.7%
1orjD00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.67 54.0 4.32e-01 100.0% 64.0%
1vkeB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.66 55.0 4.38e-01 92.3% 59.4%
1or4B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.66 58.0 4.14e-01 100.0% 76.6%
5dikA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.65 52.0 4.06e-01 88.5% 55.4%
4dloB02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.64 52.0 4.21e-01 100.0% 48.7%
3nrxA00 1.20.58.1520 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 45.0 3.70e-01 100.0% 70.7%
3tjmA02 1.10.1470.20 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 0.51 41.0 3.49e-01 92.3% 53.3%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3272556 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.95 89.0 5.76e-01 100.0% 33.8%
4943123 604.12.1.134 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › AAA 0.95 88.0 7.30e-01 100.0% 77.6%
4977808 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.94 86.0 7.67e-01 98.1% 92.9%
5055477 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.94 69.0 5.80e-01 76.9% 52.5%
4928931 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.93 68.0 4.81e-01 76.9% 30.0%
3498366 109.4.1.1577 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS7_HB 0.93 85.0 5.18e-01 100.0% 18.2%
4947260 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.92 85.0 7.21e-01 100.0% 82.5%
4999686 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.92 84.0 7.35e-01 100.0% 88.0%
5076876 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.92 80.0 6.80e-01 94.2% 78.8%
3815762 5076.2.1.10 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › PF29520 0.91 66.0 4.07e-01 76.9% 15.8%
3425085 109.4.1.95 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 0.90 78.0 5.63e-01 100.0% 36.3%
3277869 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.90 81.0 4.64e-01 98.1% 14.2%
5048081 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.89 81.0 7.09e-01 100.0% 89.3%
3714307 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.89 81.0 5.57e-01 100.0% 53.8%
3477988 109.4.1.2920 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2, TPR_6, TPR_19, PF30363 0.88 76.0 4.99e-01 100.0% 24.5%
3616190 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.86 75.0 5.17e-01 100.0% 30.6%
3707966 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.86 77.0 4.47e-01 98.1% 20.3%
3218670 109.4.1.202 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 0.86 74.0 4.79e-01 100.0% 22.8%
3840125 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.86 74.0 5.78e-01 100.0% 46.7%
3917769 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.85 72.0 4.92e-01 100.0% 28.0%
3778682 150.1.1.24 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Prominin 0.85 78.0 5.57e-01 100.0% 56.4%
3306960 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.85 77.0 5.46e-01 98.1% 44.1%
3849174 601.19.1.37 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Prominin 0.85 78.0 4.96e-01 100.0% 56.5%
3711742 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.85 77.0 5.84e-01 100.0% 68.7%
5069584 109.4.1.210 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 0.85 72.0 4.63e-01 100.0% 21.8%
3740000 109.4.1.381 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Rrn11 0.84 78.0 5.21e-01 100.0% 33.7%
3543543 109.59.1.19 alpha superhelices › Repetitive alpha hairpins › Intraflagellar transport protein 80 (IFT80) C-terminal domain › Intraflagellar transport protein 80 (IFT80) C-terminal domain › Vps16_N 0.83 74.0 6.24e-01 98.1% 91.8%
4911568 109.3.1.174 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › YVC1_C, TRPM2 0.82 77.0 4.41e-01 100.0% 23.5%
4975624 109.4.1.5 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 0.82 70.0 5.04e-01 100.0% 34.3%
3724315 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.82 65.0 4.54e-01 84.6% 32.0%
1128224 109.32.1.1 alpha superhelices › Repetitive alpha hairpins › Alkylsulfatase SdsA1 linker domain › Alkylsulfatase SdsA1 linker domain › Alkyl_sulf_dimr 0.82 69.0 5.56e-01 92.3% 57.7%
3758111 109.7.1.0 alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E 0.82 71.0 5.98e-01 100.0% 58.8%
4941825 109.4.1.202 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 0.81 71.0 5.06e-01 100.0% 40.0%
1822966 109.4.1.72 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps16_C 0.81 71.0 4.38e-01 100.0% 18.2%
4950305 3932.1.1.0 alpha bundles › CRISPR/Cas system-associated protein Csm6 6H domain › CRISPR/Cas system-associated protein Csm6 6H domain › CRISPR/Cas system-associated protein Csm6 6H domain 0.78 64.0 5.78e-01 96.2% 67.1%
3593590 5086.1.1.20 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › NYD-SP28 0.78 56.0 3.95e-01 76.9% 25.6%
3364429 109.4.1.1156 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › E_motif 0.78 64.0 4.88e-01 100.0% 39.2%
3384014 109.4.1.1269 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif 0.77 63.0 5.22e-01 100.0% 51.6%
1789790 109.4.1.72 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps16_C 0.76 67.0 4.42e-01 100.0% 25.1%
3668213 109.59.1.13 alpha superhelices › Repetitive alpha hairpins › Intraflagellar transport protein 80 (IFT80) C-terminal domain › Intraflagellar transport protein 80 (IFT80) C-terminal domain › E_motif 0.75 61.0 5.73e-01 100.0% 75.4%
3733467 109.2.1.20 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_125 0.75 68.0 3.82e-01 100.0% 23.9%
3583221 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.75 63.0 4.51e-01 100.0% 31.5%
3888751 109.4.1.192 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.74 67.0 4.47e-01 100.0% 29.5%
4017515 3924.1.1.1 alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Fungal_trans_2 0.71 59.0 3.65e-01 100.0% 22.7%