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OM868082.1__UPT53371.1__X__00001

Bact-Vir

OM868082.1__UPT53371.1__X__00001

Identity

Accession:
OM868082 ↗
Kingdom:
phage

Quality

89.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Synechococcus_phage_Yong-M2-251

TaxID: 2928846

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-68
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 50.0 5.50e-01 87.5% 96.1%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 48.0 4.64e-01 87.5% 64.8%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 53.0 5.46e-01 93.8% 91.9%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 52.0 5.07e-01 87.5% 80.6%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 50.0 4.50e-01 87.5% 64.1%
1ne8A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.63 50.0 4.12e-01 87.5% 74.1%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 50.0 4.85e-01 87.5% 81.9%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 4.73e-01 85.9% 81.4%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 49.0 4.62e-01 92.2% 73.7%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 4.53e-01 87.5% 84.7%
2yrvA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 47.0 3.85e-01 89.1% 52.2%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 4.43e-01 87.5% 94.1%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.56 45.0 3.16e-01 87.5% 29.6%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 48.0 4.46e-01 100.0% 87.5%
1b3qB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 41.0 4.06e-01 85.9% 95.6%
2cmzA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.52 38.0 3.51e-01 82.8% 84.9%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 36.0 3.17e-01 73.4% 78.8%
4mdwA00 2.30.30.1210 Mainly Beta › Roll › SH3 type barrels. › Domain of unknown function DUF1541 0.52 42.0 3.43e-01 98.4% 74.0%
2imlA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 36.0 3.12e-01 75.0% 89.4%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.52 41.0 3.29e-01 87.5% 47.0%
1vq8B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 41.0 3.29e-01 89.1% 89.1%
1vq8T00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 3.34e-01 87.5% 49.6%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 35.0 2.52e-01 70.3% 67.6%
3cxbB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 40.0 3.49e-01 87.5% 78.6%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 39.0 3.36e-01 87.5% 81.8%
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.50 41.0 3.42e-01 87.5% 80.7%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3520654 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.71 52.0 3.93e-01 87.5% 33.3%
3780847 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.69 51.0 3.89e-01 87.5% 34.0%
3226827 4.1.1.133 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_YG-box 0.67 51.0 4.32e-01 87.5% 49.5%
3464886 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 51.0 5.23e-01 87.5% 86.7%
3936726 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 48.0 5.15e-01 87.5% 90.9%
3411714 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 46.0 4.50e-01 87.5% 70.0%
3492026 4.1.1.129 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_5 0.64 53.0 4.47e-01 90.6% 64.8%
3806777 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.63 51.0 4.86e-01 89.1% 82.7%
3572964 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 55.0 4.09e-01 98.4% 73.9%
3650296 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.62 49.0 4.37e-01 87.5% 69.5%
3241817 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 45.0 4.69e-01 87.5% 83.3%
3457163 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 48.0 4.44e-01 87.5% 66.3%
3344796 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 47.0 4.36e-01 87.5% 63.9%
3357709 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 50.0 4.52e-01 87.5% 75.3%
3540253 4.1.1.78 ↗ beta barrels › SH3 › SH3 › SH3 › TTD 0.62 49.0 4.33e-01 87.5% 66.3%
3830352 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.61 49.0 4.48e-01 87.5% 78.8%
3356605 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.61 49.0 4.40e-01 87.5% 80.0%
3828371 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.61 50.0 4.51e-01 87.5% 68.2%
2410381 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.61 49.0 4.59e-01 87.5% 79.7%
3826751 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.61 48.0 4.50e-01 87.5% 73.8%
3713334 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.61 48.0 4.99e-01 87.5% 91.7%
3642926 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.61 48.0 3.47e-01 87.5% 39.5%
3645395 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.60 48.0 4.50e-01 87.5% 90.0%
3185321 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.60 48.0 4.61e-01 87.5% 82.7%
3244430 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 51.0 4.37e-01 95.3% 83.8%
3790897 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 53.0 4.61e-01 100.0% 85.0%
3373583 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.60 48.0 4.71e-01 87.5% 84.3%
3815495 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.60 48.0 4.69e-01 87.5% 81.4%
3313139 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.60 48.0 3.49e-01 87.5% 42.3%
3834112 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 47.0 4.44e-01 87.5% 91.3%
3261396 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 45.0 4.06e-01 89.1% 58.9%
3717986 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 47.0 3.89e-01 87.5% 53.9%
3718969 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 47.0 3.44e-01 87.5% 72.6%
3675120 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 47.0 4.30e-01 87.5% 76.5%
3342814 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 47.0 4.13e-01 87.5% 76.8%
3608011 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 46.0 3.81e-01 87.5% 60.8%
3646890 4.25.1.1 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › Auxin_resp 0.58 46.0 4.21e-01 87.5% 75.3%
3416672 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 52.0 4.46e-01 100.0% 82.0%
3449235 4.1.1.173 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4216 0.58 47.0 3.52e-01 92.2% 52.9%
5023597 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.57 48.0 3.70e-01 100.0% 45.6%
3237640 4.1.1.287 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5641 0.56 43.0 3.63e-01 87.5% 49.1%
3659671 4.25.1.0 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.54 44.0 4.33e-01 90.6% 85.7%
2978978 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.54 43.0 4.16e-01 89.1% 85.3%
3942912 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.54 43.0 3.93e-01 89.1% 68.2%
4870495 304.169.1.1 ↗ a+b two layers › Alpha-beta plaits › RspWYL1 C-terminal domain › RspWYL1 C-terminal domain › WYL 0.53 42.0 3.63e-01 90.6% 54.6%
2866962 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.52 41.0 3.55e-01 89.1% 55.6%
3519122 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.52 41.0 3.77e-01 89.1% 64.4%
3289944 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.51 40.0 3.66e-01 89.1% 62.2%
3290160 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.51 40.0 3.81e-01 89.1% 71.2%
4387111 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.51 40.0 3.73e-01 87.5% 85.0%