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OM868082.1__UPT53375.1__X__00005

Bact-Vir

OM868082.1__UPT53375.1__X__00005

Identity

Accession:
OM868082 ↗
Kingdom:
phage

Quality

90.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Synechococcus_phage_Yong-M2-251

TaxID: 2928846

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-65
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3uk6A02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.67 55.0 5.15e-01 100.0% 72.3%
2c9oB03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.65 54.0 5.05e-01 100.0% 73.5%
3tdgA02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 46.0 3.82e-01 100.0% 76.5%
4kjmA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.54 38.0 4.03e-01 89.2% 90.9%
1puzA00 1.10.150.250 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Flavinator of succinate dehydrogenase 0.52 42.0 3.99e-01 95.4% 93.9%
3tuiD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 37.0 2.62e-01 80.0% 71.6%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4853596 3144.1.1.1 ↗ alpha arrays › PBS linker domain of phycobilisome linker polypeptide › PBS linker domain of phycobilisome linker polypeptide › PBS linker domain of phycobilisome linker polypeptide › PBS_linker_poly 0.79 60.0 5.29e-01 90.8% 57.8%
4383903 148.1.3.18 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › TIP49_C 0.72 55.0 5.43e-01 100.0% 77.1%
3867143 2004.1.1.417 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.54 37.0 2.44e-01 70.8% 53.4%
D2 medium residues 66-136
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kb9A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.67 59.0 3.78e-01 100.0% 62.9%
4cc9B00 1.20.5.4730 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.62 48.0 4.39e-01 91.5% 62.2%
2m6uA00 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.61 51.0 4.94e-01 97.2% 91.5%
3sngA00 1.10.575.10 Mainly Alpha › Orthogonal Bundle › P1 Nuclease › P1 Nuclease 0.58 46.0 3.22e-01 91.5% 98.5%
1sg7A00 1.10.1740.70 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB 0.58 49.0 4.90e-01 97.2% 100.0%
4irlB02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.56 36.0 3.37e-01 90.1% 50.5%
4nooB00 1.10.8.1160 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 45.0 4.24e-01 98.6% 83.2%
3dl1A01 1.10.472.150 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Glucose-regulated metallo-peptidase M90, N-terminal domain 0.54 44.0 4.05e-01 100.0% 68.7%
4efcA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.52 33.0 3.45e-01 91.5% 72.1%
1gpeA03 3.30.560.10 Alpha Beta › 2-Layer Sandwich › Glucose Oxidase; domain 3 › Glucose Oxidase, domain 3 0.52 44.0 2.99e-01 100.0% 84.4%
6d2xA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 35.0 2.30e-01 70.4% 61.9%
2ewfA02 1.20.1270.310 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.50 42.0 4.11e-01 97.2% 87.7%
3tp3A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.50 41.0 3.35e-01 95.8% 89.9%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3163617 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.65 54.0 5.10e-01 98.6% 75.6%
3761203 529.1.1.0 ↗ few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) 0.63 42.0 3.72e-01 73.2% 46.7%
4060070 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.61 41.0 4.03e-01 71.8% 67.5%
3786419 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 41.0 3.87e-01 74.6% 66.7%
3270478 6155.1.1.4 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MPC 0.55 38.0 3.39e-01 70.4% 57.1%
3626343 3396.1.1.2 ↗ extended segments › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG1 domain family member 1A › DUF1757 0.55 47.0 3.44e-01 98.6% 64.9%
4216571 601.54.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › low CO2-inducible protein LCI1 › low CO2-inducible protein LCI1 0.54 37.0 3.17e-01 71.8% 95.2%
3386126 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.53 37.0 3.13e-01 73.2% 46.9%
4969258 5060.2.1.0 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 0.53 43.0 3.75e-01 90.1% 98.2%