←Back to structures
OM870970.1__UOL48135.1__vBPaerPsIn_107__00107
Bact-VirOM870970.1__UOL48135.1__vBPaerPsIn_107__00107
Identity
- Accession:
- OM870970 ↗
- Kingdom:
- phage
Quality
70.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Vandenendeviridae›
Pakpunavirus›
Pseudomonas_phage_vB_Paer_PsIn
TaxID: 2924907
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-43
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h41A02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.83 | 69.0 | 5.82e-01 | 100.0% | 88.2% |
| 4m4zA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.75 | 60.0 | 5.74e-01 | 94.7% | 100.0% |
| 1ex4B02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.75 | 61.0 | 5.45e-01 | 100.0% | 76.3% |
| 7afrX02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.74 | 60.0 | 5.38e-01 | 100.0% | 78.3% |
| 7u32F02 | 2.30.30.10 | Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral | 0.73 | 59.0 | 5.56e-01 | 100.0% | 98.0% |
| 3hfnA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 56.0 | 5.07e-01 | 100.0% | 68.3% |
| 2hbpA00 | 2.30.30.700 | Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 | 0.71 | 57.0 | 5.00e-01 | 100.0% | 72.7% |
| 1b7tA02 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.70 | 58.0 | 5.37e-01 | 100.0% | 86.5% |
| 2vb6A01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.69 | 59.0 | 5.35e-01 | 100.0% | 85.2% |
| 2ej9A02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 53.0 | 5.14e-01 | 100.0% | 87.8% |
| 1x31B01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.62 | 50.0 | 3.18e-01 | 100.0% | 58.9% |
| 2x5jQ01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 46.0 | 3.00e-01 | 84.2% | 43.0% |
| 2fi9A00 | 3.40.1230.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Mth938; Chain: A, › MTH938-like | 0.59 | 46.0 | 3.34e-01 | 92.1% | 94.9% |
| 7bexA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 42.0 | 2.88e-01 | 81.6% | 50.0% |
| 4khbD02 | 2.30.29.220 | Mainly Beta › Roll › PH-domain like › Structure-specific recognition protein (SSRP1) | 0.57 | 41.0 | 3.41e-01 | 84.2% | 77.8% |
| 1v7lA01 | 3.20.19.10 | Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 | 0.52 | 37.0 | 2.64e-01 | 86.8% | 82.2% |
| 3nqzA01 | 3.10.450.490 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 35.0 | 2.86e-01 | 81.6% | 61.5% |
| 2ewvA01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.50 | 35.0 | 2.77e-01 | 92.1% | 29.4% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5064548 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.79 | 67.0 | 6.13e-01 | 100.0% | 73.6% |
| 4559371 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 65.0 | 5.66e-01 | 100.0% | 76.2% |
| 3782293 | 4.1.1.170 ↗ | beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind | 0.77 | 66.0 | 5.89e-01 | 100.0% | 74.5% |
| 3516333 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 63.0 | 5.72e-01 | 100.0% | 80.0% |
| 3216433 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.75 | 59.0 | 5.85e-01 | 89.5% | 100.0% |
| 4032123 | 4112.1.1.1 ↗ | beta duplicates or obligate multimers › YopX, N-terminal domain-like › YopX, N-terminal domain-like › YopX, N-terminal domain-like › YopX | 0.73 | 61.0 | 5.35e-01 | 100.0% | 63.3% |
| 4844109 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.72 | 60.0 | 5.00e-01 | 100.0% | 60.6% |
| 3290509 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.72 | 62.0 | 4.73e-01 | 100.0% | 48.9% |
| 3588736 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 58.0 | 4.97e-01 | 94.7% | 84.6% |
| 3587629 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 56.0 | 4.96e-01 | 100.0% | 72.3% |
| 4627519 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 57.0 | 5.65e-01 | 94.7% | 100.0% |
| 4241528 | 7538.1.1.1 ↗ | a/b three-layered sandwiches › Hypothetical protein MT938 (MTH938) › Hypothetical protein MT938 (MTH938) › Hypothetical protein MT938 (MTH938) › DUF498 | 0.70 | 47.0 | 3.32e-01 | 71.1% | 85.0% |
| 5030093 | 4.1.1.301 ↗ | beta barrels › SH3 › SH3 › SH3 › MJ1316 | 0.69 | 56.0 | 4.67e-01 | 100.0% | 57.3% |
| 5003538 | 3962.1.1.0 ↗ | alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit | 0.69 | 50.0 | 3.10e-01 | 81.6% | 19.6% |
| 5042087 | 4.1.1.301 ↗ | beta barrels › SH3 › SH3 › SH3 › MJ1316 | 0.68 | 56.0 | 4.67e-01 | 100.0% | 58.7% |
| 3599156 | 7538.1.1.0 ↗ | a/b three-layered sandwiches › Hypothetical protein MT938 (MTH938) › Hypothetical protein MT938 (MTH938) › Hypothetical protein MT938 (MTH938) | 0.68 | 46.0 | 3.31e-01 | 71.1% | 95.7% |
| 4882420 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.68 | 55.0 | 5.17e-01 | 100.0% | 84.3% |
| 5077562 | 4.1.2.2 ↗ | beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › MJ1316 | 0.67 | 53.0 | 4.49e-01 | 100.0% | 53.3% |
| 4980977 | 4.1.1.301 ↗ | beta barrels › SH3 › SH3 › SH3 › MJ1316 | 0.66 | 53.0 | 4.39e-01 | 100.0% | 56.2% |
| 5064098 | 2003.1.3.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 | 0.66 | 55.0 | 3.39e-01 | 100.0% | 31.9% |
| 3289293 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.65 | 43.0 | 2.98e-01 | 71.1% | 20.0% |
| 4569447 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.63 | 45.0 | 3.13e-01 | 71.1% | 65.6% |
| 4333056 | 2004.1.2.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_GTP | 0.61 | 47.0 | 2.82e-01 | 100.0% | 44.3% |
| 3411584 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.61 | 47.0 | 3.79e-01 | 94.7% | 44.9% |
| 160394 | 7538.1.1.1 ↗ | a/b three-layered sandwiches › Hypothetical protein MT938 (MTH938) › Hypothetical protein MT938 (MTH938) › Hypothetical protein MT938 (MTH938) › DUF498 | 0.60 | 40.0 | 2.91e-01 | 71.1% | 20.6% |
| 4943181 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.58 | 42.0 | 2.89e-01 | 76.3% | 55.9% |
| 3784655 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.58 | 42.0 | 2.39e-01 | 73.7% | 85.5% |
| 4990621 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.56 | 47.0 | 3.81e-01 | 100.0% | 53.8% |
| 4249168 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.53 | 44.0 | 3.07e-01 | 92.1% | 70.8% |