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OM897575.1__UOL49088.1__X__00023

Bact-Vir

OM897575.1__UOL49088.1__X__00023

Identity

Accession:
OM897575 ↗
Kingdom:
phage

Quality

73.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Saffermanviridae› Wumpquatrovirus› Leptolyngbya_phage_Lbo240-yong1

TaxID: 2928836

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-55
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x7iA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.79 70.0 5.13e-01 100.0% 97.7%
7wq5A01 3.30.730.10 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain 0.78 57.0 5.44e-01 81.6% 67.2%
2d1cA02 3.30.70.1570 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.73 63.0 4.91e-01 100.0% 85.6%
2olsA01 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.71 60.0 4.16e-01 100.0% 36.1%
1x60A01 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.69 60.0 5.36e-01 100.0% 100.0%
2dt9A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.68 56.0 4.87e-01 95.9% 100.0%
3ramA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 54.0 4.26e-01 100.0% 91.5%
2hw4A01 3.50.20.20 Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Janus/Ocnus 0.65 55.0 4.34e-01 100.0% 67.3%
2rilA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 48.0 3.87e-01 79.6% 53.7%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.64 53.0 3.80e-01 100.0% 46.7%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.64 51.0 4.90e-01 100.0% 82.5%
5uejA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 51.0 4.11e-01 100.0% 98.2%
4mamA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.64 50.0 4.38e-01 98.0% 55.6%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 51.0 4.48e-01 100.0% 95.2%
3bf4A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 52.0 4.28e-01 100.0% 100.0%
5h4zA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.63 54.0 4.03e-01 100.0% 43.4%
1yk9A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.63 50.0 3.59e-01 100.0% 58.2%
3o1lB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 50.0 4.34e-01 100.0% 94.3%
4lvnP00 3.30.70.2380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 49.0 4.29e-01 93.9% 93.8%
2crmA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 47.0 4.22e-01 100.0% 57.0%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.61 48.0 3.54e-01 100.0% 38.4%
7wdtA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 52.0 3.78e-01 100.0% 32.7%
1hqz800 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.61 49.0 3.69e-01 98.0% 34.8%
2h5eA03 3.30.70.3280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptide chain release factor 3, domain III 0.61 51.0 3.80e-01 100.0% 51.1%
4gxbA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 45.0 3.86e-01 100.0% 46.4%
2npnA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.59 48.0 3.88e-01 100.0% 44.0%
3n0vA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 48.0 4.20e-01 100.0% 97.6%
2wadA02 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.59 43.0 3.28e-01 98.0% 29.1%
1gsaA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.58 48.0 4.46e-01 100.0% 72.3%
3tzyA02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.58 48.0 4.35e-01 98.0% 91.4%
3natA01 3.40.50.11250 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF3013 0.57 45.0 3.21e-01 87.8% 48.3%
1cfyA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.56 45.0 3.48e-01 100.0% 44.4%
6aj3B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.56 46.0 3.33e-01 100.0% 57.8%
2zaiB03 2.60.40.3020 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 44.0 3.64e-01 100.0% 50.5%
2hevF00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.54 41.0 3.23e-01 100.0% 35.7%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 42.0 3.35e-01 98.0% 95.3%
3lqcA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 38.0 2.86e-01 85.7% 32.5%
2opjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 41.0 3.46e-01 89.8% 67.4%
6pcoC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 39.0 2.89e-01 85.7% 42.4%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3974688 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.84 60.0 5.99e-01 77.6% 74.0%
7726 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.77 57.0 5.39e-01 79.6% 67.2%
86702 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.75 55.0 5.43e-01 79.6% 75.0%
4985395 304.4.1.75 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › GYD 0.75 62.0 5.49e-01 95.9% 100.0%
2579422 4326.1.1.1 ↗ a+b two layers › ERH-like › ERH-like › ERH-like › ER 0.71 59.0 4.91e-01 100.0% 71.3%
4537345 304.4.1.1 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.69 59.0 5.01e-01 100.0% 84.7%
4987385 304.4.1.2 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › MIase 0.69 58.0 4.89e-01 100.0% 96.7%
4964337 3115.5.1.1 ↗ a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.69 56.0 5.51e-01 100.0% 90.9%
5027371 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.68 58.0 3.98e-01 100.0% 27.2%
5045093 304.11.1.16 ↗ a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › DUF2110_C 0.68 57.0 5.06e-01 98.0% 93.3%
4578112 304.4.1.1 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.68 58.0 4.85e-01 100.0% 81.1%
4262166 304.54.1.0 ↗ a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like 0.66 56.0 4.86e-01 100.0% 95.0%
3477039 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.66 53.0 4.01e-01 98.0% 35.6%
5080205 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.65 52.0 5.22e-01 100.0% 96.0%
3338287 221.1.1.166 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF26130 0.64 50.0 4.65e-01 100.0% 67.7%
4502459 304.24.1.4 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › RF3_C 0.63 53.0 3.95e-01 100.0% 53.6%
3927610 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.63 49.0 4.03e-01 100.0% 43.8%
5025566 304.7.1.0 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.62 51.0 4.99e-01 95.9% 100.0%
3505715 304.24.1.3 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.62 52.0 4.54e-01 100.0% 91.3%
3666791 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 49.0 4.96e-01 98.0% 100.0%
3840130 272.1.1.3 ↗ a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_2 0.61 43.0 3.78e-01 79.6% 100.0%
3665387 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.61 49.0 3.96e-01 98.0% 44.8%
3611176 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 44.0 2.85e-01 81.6% 56.9%
3556189 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.60 48.0 4.09e-01 95.9% 85.6%
3326623 221.1.1.166 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF26130 0.59 46.0 4.21e-01 100.0% 64.3%
3216210 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.59 46.0 4.60e-01 98.0% 100.0%
3740216 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.58 46.0 3.46e-01 98.0% 34.1%
3333066 5050.1.1.1 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr 0.58 44.0 2.57e-01 87.8% 80.2%
4433786 382.1.1.1 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 0.58 47.0 4.10e-01 100.0% 88.2%
3582833 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.58 46.0 3.77e-01 100.0% 46.4%
3268521 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 45.0 3.36e-01 100.0% 31.0%
3694201 221.1.1.46 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_ICP0_bdg 0.57 46.0 3.48e-01 98.0% 68.1%
3472541 10.32.1.184 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Androglobin_II 0.56 44.0 3.72e-01 98.0% 46.9%
3312666 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 47.0 4.28e-01 100.0% 72.9%
3740673 11.2.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PI3K_C2 0.55 43.0 2.93e-01 95.9% 87.7%
3415245 4342.1.1.1 ↗ alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like › Tex_central_region 0.55 47.0 3.15e-01 100.0% 26.0%
3599827 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 43.0 3.14e-01 100.0% 46.5%
5005349 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 40.0 2.37e-01 87.8% 35.2%
4338346 284.1.1.1 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C 0.51 39.0 3.46e-01 100.0% 83.3%
3938251 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 39.0 3.31e-01 98.0% 66.7%
3904665 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 37.0 2.86e-01 100.0% 31.5%