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OM912979.1__UPW42612.1__BAHKABFF_00062__00062

Bact-Vir

OM912979.1__UPW42612.1__BAHKABFF_00062__00062

Identity

Accession:
OM912979 ↗
Kingdom:
phage

Quality

79.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Swiduovirus› Salmonella_phage_CF-SP1

TaxID: 2935507

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-89
PDB
Domain cluster: rep: NC_073217.1__YP_010748706.1__QA066_gp66__00066__D3-68
D2 high residues 103-157
PDB
Domain cluster: representative
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 63.0 5.67e-01 100.0% 61.6%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 60.0 5.54e-01 100.0% 65.2%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.78 56.0 6.08e-01 92.7% 91.3%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 66.0 6.70e-01 100.0% 96.2%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.77 59.0 6.07e-01 100.0% 86.5%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 60.0 5.72e-01 98.2% 73.0%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 59.0 4.98e-01 100.0% 51.1%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 58.0 5.71e-01 100.0% 76.7%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.76 56.0 5.94e-01 100.0% 91.7%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.75 67.0 4.44e-01 100.0% 28.6%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 58.0 5.86e-01 100.0% 83.9%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 59.0 5.57e-01 100.0% 72.3%
4i86A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.74 59.0 4.76e-01 87.3% 71.6%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 53.0 5.61e-01 92.7% 89.6%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 55.0 5.71e-01 100.0% 92.0%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 59.0 6.21e-01 100.0% 100.0%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 63.0 5.49e-01 100.0% 69.0%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.69 53.0 5.42e-01 100.0% 87.0%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.69 59.0 5.57e-01 100.0% 80.6%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 51.0 5.30e-01 100.0% 91.8%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.67 58.0 4.88e-01 100.0% 62.9%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.66 58.0 4.67e-01 100.0% 52.3%
3d6xB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.64 51.0 3.79e-01 87.3% 80.0%
4gzvA00 2.40.128.490 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 0.63 54.0 4.00e-01 94.5% 59.7%
3voqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 55.0 4.36e-01 100.0% 68.1%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.63 47.0 3.38e-01 87.3% 29.8%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 54.0 4.75e-01 100.0% 68.7%
2pimA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.62 48.0 3.60e-01 83.6% 77.3%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.62 54.0 4.53e-01 100.0% 60.0%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 50.0 3.98e-01 92.7% 86.7%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.61 47.0 3.88e-01 89.1% 50.9%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 52.0 4.97e-01 100.0% 81.8%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.60 51.0 4.34e-01 98.2% 70.2%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 51.0 3.00e-01 98.2% 91.8%
4bf3A00 2.30.31.50 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F 0.59 47.0 3.77e-01 98.2% 77.4%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 49.0 3.86e-01 100.0% 71.9%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.58 43.0 2.77e-01 80.0% 31.2%
1c8uA02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 45.0 3.53e-01 83.6% 80.9%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 50.0 4.08e-01 100.0% 71.6%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.57 39.0 3.50e-01 83.6% 50.0%
4u3vA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.57 47.0 3.13e-01 94.5% 49.2%
1zc0A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.57 40.0 2.61e-01 76.4% 40.9%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 44.0 4.28e-01 90.9% 78.7%
3cjyA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.57 45.0 2.92e-01 87.3% 77.5%
4qfwA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.57 45.0 2.92e-01 87.3% 59.3%
3rd7A00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.56 46.0 2.96e-01 90.9% 60.7%
2a22B00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.56 43.0 2.92e-01 83.6% 92.6%
3u0aA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.56 44.0 2.83e-01 85.5% 34.8%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.56 46.0 3.28e-01 100.0% 83.1%
1yguA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 40.0 2.59e-01 78.2% 44.6%
4lgvD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 43.0 2.89e-01 92.7% 62.6%
1m2xA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.54 39.0 2.63e-01 76.4% 27.4%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.53 39.0 3.01e-01 85.5% 63.6%
4hwxA00 3.30.350.10 Alpha Beta › 2-Layer Sandwich › Subtilisin Inhibitor › Subtilisin inhibitor-like 0.53 38.0 3.01e-01 76.4% 92.1%
1dwnA00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.52 43.0 3.29e-01 90.9% 44.9%
3h6qA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 42.0 3.16e-01 98.2% 95.8%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.50 42.0 3.33e-01 98.2% 72.8%
ECOD (84)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3907619 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.83 64.0 5.47e-01 100.0% 52.9%
3420348 4.1.1.306 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.83 62.0 6.27e-01 100.0% 80.0%
3407089 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.82 63.0 5.52e-01 100.0% 56.2%
3854862 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.82 62.0 5.07e-01 100.0% 46.3%
3996278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.81 61.0 4.66e-01 100.0% 36.7%
3586487 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 63.0 5.36e-01 100.0% 54.1%
3299797 4.1.1.306 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.80 61.0 5.95e-01 100.0% 75.0%
3616243 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 60.0 6.09e-01 100.0% 81.8%
3922426 4.1.1.363 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet, Tudor_FRX1 0.79 62.0 4.77e-01 100.0% 39.2%
3795121 4.1.1.110 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_FRX1 0.79 61.0 5.77e-01 100.0% 70.8%
3617111 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.78 60.0 5.03e-01 100.0% 50.0%
3941391 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 59.0 5.79e-01 94.5% 75.0%
3968432 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.78 63.0 4.99e-01 87.3% 77.1%
3570399 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 67.0 6.33e-01 100.0% 80.0%
3218198 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 58.0 5.87e-01 100.0% 81.8%
3485965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 60.0 5.87e-01 100.0% 78.3%
3562168 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.76 59.0 4.99e-01 100.0% 51.1%
3474715 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 58.0 5.53e-01 100.0% 70.8%
3578208 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 60.0 6.04e-01 100.0% 89.1%
171891 4.1.1.110 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_FRX1 0.74 58.0 5.81e-01 100.0% 85.5%
4105189 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.73 59.0 4.88e-01 87.3% 75.8%
4246480 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.73 59.0 4.86e-01 87.3% 75.8%
3484822 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.73 59.0 5.27e-01 100.0% 62.5%
3630782 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.72 58.0 4.23e-01 100.0% 33.1%
1815428 3454.1.1.1 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › PilP 0.72 52.0 4.33e-01 87.3% 44.2%
4058174 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 56.0 5.35e-01 100.0% 73.8%
3231154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 58.0 5.13e-01 100.0% 62.5%
3928711 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 58.0 5.01e-01 100.0% 58.8%
4251101 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 62.0 5.39e-01 100.0% 71.8%
4177200 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.70 55.0 5.53e-01 100.0% 87.3%
4632710 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 49.0 5.32e-01 81.8% 91.1%
4078162 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 62.0 5.63e-01 100.0% 79.7%
3931905 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 56.0 4.48e-01 100.0% 43.5%
3847592 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.70 58.0 3.41e-01 98.2% 11.1%
1229008 206.1.1.9 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 0.70 53.0 4.70e-01 85.5% 75.0%
4293453 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 59.0 5.22e-01 100.0% 66.3%
3936053 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.69 58.0 5.43e-01 100.0% 77.1%
4983588 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.69 55.0 5.05e-01 90.9% 68.0%
4033182 4.1.1.61 ↗ beta barrels › SH3 › SH3 › SH3 › KapB 0.68 59.0 4.63e-01 100.0% 60.8%
3576940 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 55.0 3.61e-01 100.0% 21.8%
3511375 4.1.1.349 ↗ beta barrels › SH3 › SH3 › SH3 › ROF 0.67 54.0 4.72e-01 100.0% 58.8%
3637664 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.67 58.0 4.55e-01 100.0% 53.3%
3354387 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.66 59.0 5.12e-01 100.0% 81.2%
4936051 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 56.0 5.61e-01 100.0% 98.2%
3879653 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.66 56.0 5.25e-01 100.0% 75.7%
4340758 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 58.0 5.41e-01 100.0% 85.7%
4073433 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 58.0 5.14e-01 100.0% 75.0%
4281699 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 59.0 5.30e-01 100.0% 78.7%
3789647 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 56.0 4.15e-01 100.0% 40.0%
3749631 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.65 50.0 4.10e-01 90.9% 44.8%
4220126 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 56.0 4.93e-01 100.0% 67.1%
3888254 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 47.0 5.05e-01 89.1% 97.8%
1793524 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.64 55.0 4.60e-01 100.0% 62.6%
4930408 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.64 52.0 4.26e-01 89.1% 94.0%
2831853 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.64 55.0 4.03e-01 100.0% 39.0%
3954938 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 55.0 5.25e-01 100.0% 84.6%
3804237 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.63 51.0 3.17e-01 92.7% 21.2%
4318415 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.63 53.0 4.46e-01 94.5% 82.1%
3173156 4.1.1.344 ↗ beta barrels › SH3 › SH3 › SH3 › PF31193 0.63 54.0 4.85e-01 100.0% 67.5%
3328647 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.63 54.0 4.74e-01 100.0% 63.5%
4069560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 55.0 4.98e-01 100.0% 78.7%
4528719 4.1.1.438 ↗ beta barrels › SH3 › SH3 › SH3 › PF27440 0.63 54.0 5.16e-01 100.0% 95.4%
3598125 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 53.0 4.83e-01 100.0% 73.3%
4481026 4.1.1.407 ↗ beta barrels › SH3 › SH3 › SH3 › PF29661 0.61 51.0 5.05e-01 100.0% 90.0%
3744711 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.61 48.0 3.54e-01 94.5% 34.1%
3781936 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.60 46.0 3.67e-01 83.6% 87.8%
5060010 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 45.0 5.01e-01 78.2% 97.8%
3288884 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 47.0 3.80e-01 87.3% 54.3%
5030187 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.58 42.0 3.84e-01 78.2% 89.7%
5015593 3111.1.1.0 ↗ beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.58 47.0 3.67e-01 90.9% 40.8%
4954981 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.58 43.0 3.09e-01 76.4% 67.1%
3781666 222.1.1.10 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3 0.57 46.0 3.47e-01 87.3% 75.4%
3199555 219.1.1.93 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.57 48.0 3.79e-01 100.0% 46.4%
5000550 5.1.4.43 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 0.56 46.0 2.89e-01 92.7% 53.8%
5010197 11.1.1.1438 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28525 0.56 41.0 3.47e-01 78.2% 88.4%
4336488 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.56 45.0 4.21e-01 90.9% 81.4%
4014375 3256.1.1.0 ↗ a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain 0.56 40.0 4.21e-01 78.2% 98.0%
3264437 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 41.0 3.36e-01 80.0% 88.6%
4963369 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.56 50.0 3.51e-01 100.0% 81.2%
4040973 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.55 44.0 4.14e-01 90.9% 81.4%
3200223 5.1.4.31 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lgl_C 0.53 45.0 2.50e-01 100.0% 7.3%
4940436 3414.1.1.0 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.53 41.0 3.54e-01 85.5% 56.7%
4959998 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 41.0 3.46e-01 90.9% 93.3%
5018457 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.75e-01 89.1% 92.9%
D3 high residues 161-201
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qc1A01 1.25.40.540 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TAP42-like family 0.78 52.0 3.47e-01 78.0% 19.2%
3lphC00 6.10.140.630 Special › Helix non-globular › Helix Hairpins › 0.77 51.0 4.46e-01 73.2% 48.3%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.76 55.0 4.22e-01 80.5% 35.1%
3ermB00 1.10.10.710 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like 0.75 65.0 5.67e-01 100.0% 65.6%
7z67A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.75 60.0 3.79e-01 92.7% 67.0%
2h8pC00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.74 59.0 5.40e-01 92.7% 80.7%
6pmiF01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.73 61.0 5.01e-01 100.0% 60.0%
6ldiF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 57.0 4.56e-01 100.0% 44.8%
3umgA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.70 57.0 4.97e-01 100.0% 66.2%
1hlvA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 53.0 4.79e-01 87.8% 70.0%
4mtxD00 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.69 48.0 3.66e-01 73.2% 31.6%
4i8qA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.68 51.0 3.06e-01 90.2% 11.6%
4m70B00 1.10.246.200 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain 0.66 56.0 4.40e-01 100.0% 50.5%
2ipcA04 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.65 52.0 3.32e-01 100.0% 29.8%
1grlB01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.64 52.0 3.33e-01 100.0% 37.7%
2yqzA02 1.10.8.900 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.63 52.0 4.55e-01 100.0% 86.8%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.62 53.0 4.14e-01 100.0% 44.6%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.62 53.0 4.60e-01 100.0% 61.2%
1xjaB00 2.60.120.280 Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC 0.62 52.0 3.58e-01 100.0% 38.3%
2cfaA01 3.30.1360.170 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.61 48.0 3.38e-01 92.7% 64.6%
4cc9B00 1.20.5.4730 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.60 51.0 3.85e-01 95.1% 52.0%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.59 47.0 3.90e-01 97.6% 73.6%
2bskB00 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.59 48.0 4.29e-01 100.0% 63.1%
3thxB02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.58 47.0 3.29e-01 97.6% 28.3%
1gkuB03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 48.0 3.22e-01 100.0% 56.1%
1dihA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.57 46.0 3.51e-01 92.7% 97.2%
2aa4A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 48.0 3.38e-01 97.6% 50.4%
3i3gA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 50.0 3.41e-01 100.0% 47.6%
4nnaA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 46.0 2.75e-01 100.0% 26.2%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4020548 7579.1.1.58 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF829 0.82 74.0 4.34e-01 100.0% 13.9%
3173183 101.1.2.134 ↗ alpha arrays › HTH › HTH › winged helix domain › Stn1_C 0.76 65.0 5.03e-01 97.6% 66.7%
3434185 7018.1.1.0 ↗ few secondary structure elements › gp76 helical domain › gp76 helical domain › gp76 helical domain 0.73 61.0 6.22e-01 97.6% 100.0%
3211598 864.1.1.1 ↗ a+b two layers › DLC › DLC › DLC › Dynein_light 0.73 61.0 4.70e-01 100.0% 42.4%
3593195 110.1.1.0 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain 0.72 57.0 4.76e-01 100.0% 48.2%
1546122 142.1.1.3 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 0.70 57.0 5.57e-01 100.0% 87.5%
None — 0.70 59.0 3.45e-01 100.0% 11.8%
3407641 106.1.1.8 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › HisK-N-like 0.69 55.0 3.78e-01 100.0% 24.5%
4943201 181.1.1.32 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54 0.68 56.0 4.56e-01 100.0% 49.4%
4178707 192.6.1.1 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE 0.67 45.0 4.27e-01 70.7% 80.0%
3737750 109.4.1.255 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_22 0.67 56.0 3.88e-01 100.0% 27.1%
3268188 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.67 51.0 5.15e-01 87.8% 100.0%
3731146 109.4.1.255 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_22 0.66 55.0 3.78e-01 100.0% 27.1%
3633470 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.65 52.0 3.83e-01 97.6% 31.8%
3224794 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.65 52.0 4.30e-01 90.2% 58.7%
3401272 174.1.1.29 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF4728 0.65 55.0 3.66e-01 97.6% 25.9%
4991095 7064.1.1.1 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 0.64 55.0 3.75e-01 100.0% 26.5%
3605910 3788.1.1.0 ↗ alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) 0.64 50.0 3.73e-01 100.0% 33.1%
4015038 7516.1.1.0 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases 0.64 52.0 2.91e-01 100.0% 6.8%
3960409 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.64 49.0 3.84e-01 100.0% 36.5%
3590765 162.1.1.0 ↗ alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD 0.64 51.0 4.12e-01 92.7% 44.7%
3768580 3860.1.1.0 ↗ alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.64 53.0 4.17e-01 100.0% 46.0%
3488020 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.63 54.0 3.51e-01 100.0% 37.0%
4165011 192.6.1.1 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE 0.63 48.0 4.50e-01 80.5% 85.7%
3167160 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 52.0 2.95e-01 100.0% 13.3%
5051629 2007.1.14.7 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › HGD-D 0.62 55.0 3.60e-01 100.0% 70.6%
4535381 101.1.2.603 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9 0.62 50.0 3.26e-01 100.0% 59.6%
3781172 101.1.2.517 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD 0.62 55.0 3.15e-01 100.0% 10.1%
3893015 5058.1.1.46 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › TSNAXIP1_N 0.61 51.0 4.31e-01 97.6% 55.7%
4974229 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.60 47.0 3.09e-01 92.7% 20.0%
4359328 142.1.1.44 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › GerPC 0.60 49.0 3.86e-01 100.0% 41.0%
5060163 4009.1.1.0 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.60 47.0 4.24e-01 95.1% 78.5%
4580985 101.1.2.603 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9 0.60 48.0 2.90e-01 100.0% 35.5%
3598977 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.57 47.0 3.80e-01 97.6% 49.4%
4939264 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.53 47.0 3.92e-01 100.0% 92.9%
3972632 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.53 46.0 3.58e-01 100.0% 45.6%