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OM953433.1__UTC26080.1__Henu11_gp51__00051

Bact-Vir

OM953433.1__UTC26080.1__Henu11_gp51__00051

Identity

Accession:
OM953433 ↗
Kingdom:
phage

Quality

83.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Andersonviridae› Mooglevirus› Shigella_phage_Henu11

TaxID: 2930391

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-80
PDB
Domain cluster: rep: OR387886.1__WNO29425.1__X__00035__D3-58
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 44.0 4.41e-01 75.0% 78.2%
1qdmA03 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.60 46.0 4.63e-01 82.9% 83.1%
1nklA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.56 45.0 4.53e-01 92.1% 94.9%
4jcyA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.53 40.0 3.81e-01 82.9% 89.1%
1tedA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 43.0 3.52e-01 96.1% 82.6%
4dveA00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.51 38.0 3.06e-01 86.8% 61.4%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3590003 2004.1.1.156 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.68 50.0 3.37e-01 76.3% 33.2%
5070938 5060.2.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.65 47.0 3.92e-01 88.2% 44.6%
4991449 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.62 49.0 3.84e-01 84.2% 47.5%
3290358 5060.2.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.62 47.0 4.00e-01 82.9% 50.8%
4935514 5060.2.1.0 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 0.61 48.0 3.67e-01 85.5% 52.8%
3971692 5060.2.1.0 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 0.60 43.0 3.68e-01 89.5% 46.4%
5026462 5060.1.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39 0.59 42.0 3.68e-01 76.3% 99.2%
4926879 7064.1.1.1 ↗ alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 0.59 43.0 3.52e-01 78.9% 72.0%
4999943 5060.2.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.59 46.0 3.96e-01 85.5% 74.4%
5057402 5060.2.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.58 43.0 3.61e-01 89.5% 45.2%
5036080 5060.2.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.57 44.0 3.63e-01 85.5% 64.1%
4932273 5060.2.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.57 44.0 3.92e-01 86.8% 80.0%
5058229 5060.2.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.56 45.0 3.93e-01 88.2% 80.0%
5056253 5060.2.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.56 44.0 3.81e-01 85.5% 78.3%
5029133 5060.2.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.56 44.0 3.81e-01 85.5% 78.3%
4980968 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.55 39.0 2.55e-01 77.6% 85.5%
3976148 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.55 42.0 3.88e-01 82.9% 83.7%
4941376 5060.2.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.54 43.0 3.50e-01 89.5% 61.9%
5033486 5060.2.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.54 44.0 3.63e-01 89.5% 68.6%
5068124 5060.2.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.53 42.0 3.68e-01 86.8% 63.3%
4968262 5060.2.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.51 40.0 3.64e-01 89.5% 83.6%
D2 high residues 98-163
PDB
Domain cluster: rep: OQ845959.1__WIV78967.1__X__00002__D84-149
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1v5vA03 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.69 47.0 4.56e-01 100.0% 62.7%
1sr4C00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.66 57.0 4.43e-01 100.0% 83.8%
1bzoA00 2.60.40.200 Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain 0.63 56.0 4.31e-01 100.0% 96.7%
3h6zA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 48.0 4.01e-01 100.0% 49.1%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 48.0 4.76e-01 100.0% 80.0%
4u13A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 47.0 4.03e-01 84.8% 98.2%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 47.0 4.50e-01 100.0% 73.3%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 46.0 4.70e-01 100.0% 89.1%
2d8iA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.58 43.0 3.94e-01 80.3% 89.8%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 4.18e-01 100.0% 86.2%
1wosA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.57 46.0 4.23e-01 89.4% 69.8%
2yubA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.57 41.0 3.59e-01 80.3% 77.3%
2db5A00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.56 41.0 3.39e-01 80.3% 61.7%
4nehA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.55 44.0 2.78e-01 92.4% 31.5%
5f67B00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.54 39.0 3.57e-01 81.8% 83.5%
4d4rB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 43.0 3.98e-01 92.4% 86.7%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 40.0 4.12e-01 100.0% 87.1%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.52 36.0 3.97e-01 74.2% 96.1%
3htrA00 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.52 43.0 3.88e-01 97.0% 67.3%
6jn7A01 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.51 40.0 3.09e-01 92.4% 82.9%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.50 38.0 3.17e-01 87.9% 86.0%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4161622 1.1.7.70 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_GLAA-B_II 0.66 46.0 4.46e-01 100.0% 65.3%
4333010 1.1.7.70 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_GLAA-B_II 0.63 42.0 4.04e-01 95.5% 60.0%
3323474 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.63 50.0 4.50e-01 100.0% 62.2%
3815495 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.61 47.0 4.66e-01 100.0% 78.6%
3826751 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.60 48.0 4.50e-01 100.0% 71.2%
3798408 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.59 50.0 3.91e-01 100.0% 92.9%
3212772 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.59 43.0 4.19e-01 100.0% 71.6%
3826545 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.58 52.0 4.46e-01 100.0% 71.4%
3445055 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.58 52.0 4.43e-01 100.0% 69.5%
3434094 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.56 50.0 4.45e-01 100.0% 75.8%
3310577 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.56 50.0 4.36e-01 100.0% 68.0%
3238955 4.1.1.377 ↗ beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.56 42.0 3.99e-01 100.0% 68.8%
3196091 708.1.2.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like 0.55 48.0 4.20e-01 100.0% 91.4%
3406371 6.1.1.4 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.55 47.0 3.71e-01 100.0% 86.7%
3831409 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.55 48.0 4.22e-01 100.0% 69.0%
3495447 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.54 41.0 3.41e-01 100.0% 45.0%
3798312 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.53 40.0 3.95e-01 100.0% 78.6%
4076295 375.1.1.88 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ogr_Delta 0.53 35.0 3.73e-01 74.2% 81.8%
1147819 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.52 43.0 3.87e-01 97.0% 71.7%
3935716 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.52 39.0 3.82e-01 100.0% 74.7%
4483091 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.52 45.0 3.86e-01 100.0% 61.0%
135550 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.52 43.0 3.88e-01 97.0% 67.3%