←Back to structures

OM971648.1__UQJ95010.1__IANJMKHF_00104__00104

Bact-Vir

OM971648.1__UQJ95010.1__IANJMKHF_00104__00104

Identity

Accession:
OM971648 ↗
Kingdom:
phage

Quality

79.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Slopekvirus› Klebsiella_phage_CPRSA

TaxID: 2935722

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 2-54
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kcqA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.69 42.0 3.05e-01 98.1% 20.9%
2gsbA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 36.0 3.14e-01 92.5% 32.1%
6nvxB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.62 39.0 3.54e-01 100.0% 44.2%
3wecA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.60 49.0 2.91e-01 90.6% 83.5%
1s1fA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.60 49.0 2.93e-01 92.5% 77.1%
4tpoA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.60 49.0 2.90e-01 90.6% 83.7%
1p1hB01 3.30.2360.10 Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain 0.58 49.0 3.49e-01 100.0% 55.7%
4l0fA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.58 47.0 2.79e-01 92.5% 76.0%
3ko2A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.58 48.0 3.53e-01 100.0% 43.5%
3rwlA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.58 48.0 2.85e-01 94.3% 81.9%
4hkhA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.57 46.0 3.52e-01 100.0% 65.8%
1yw6B00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.57 43.0 2.80e-01 90.6% 46.7%
4rqyA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 48.0 3.74e-01 100.0% 74.0%
8gjaD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 41.0 2.71e-01 94.3% 16.7%
2f8xC02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 47.0 3.44e-01 100.0% 45.6%
1y12B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.54 33.0 2.44e-01 96.2% 20.5%
7nitA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 38.0 3.16e-01 96.2% 36.5%
1c3gA01 2.60.260.20 Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain 0.53 34.0 3.08e-01 92.5% 44.9%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.53 38.0 3.13e-01 100.0% 37.2%
7xlqD01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 40.0 3.09e-01 98.1% 34.9%
1mkeA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.06e-01 98.1% 31.9%
3p5jB01 2.20.25.530 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.52 37.0 3.43e-01 96.2% 56.8%
5w8oA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 43.0 2.70e-01 98.1% 24.6%
7uvpA03 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.52 41.0 3.20e-01 98.1% 74.5%
3nkgA00 2.60.120.790 Mainly Beta › Sandwich › Jelly Rolls › 0.52 35.0 2.59e-01 92.5% 22.9%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 36.0 3.04e-01 100.0% 39.8%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 37.0 3.02e-01 100.0% 38.7%
2vngA00 2.60.120.1060 Mainly Beta › Sandwich › Jelly Rolls › NPCBM/NEW2 domain 0.51 43.0 3.09e-01 100.0% 86.5%
2k5wA00 2.40.50.480 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 0.50 42.0 3.37e-01 96.2% 72.1%
2ogjA01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.50 42.0 3.39e-01 100.0% 51.3%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5000532 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.71 48.0 3.24e-01 71.7% 38.0%
5010674 4076.3.1.11 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PF25865 0.70 46.0 4.58e-01 100.0% 65.5%
3692049 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.65 54.0 3.12e-01 92.5% 78.9%
3933891 1.1.1.8 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas 0.65 42.0 3.34e-01 98.1% 31.3%
3702369 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.64 56.0 4.17e-01 100.0% 50.4%
3171144 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.64 55.0 3.28e-01 98.1% 23.0%
3471584 7579.1.1.5 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S10 0.64 42.0 2.45e-01 96.2% 7.6%
5020005 3604.1.1.0 ↗ a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain 0.64 45.0 4.11e-01 98.1% 54.7%
3728958 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.63 52.0 3.04e-01 92.5% 78.5%
3722347 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.62 52.0 2.98e-01 92.5% 80.8%
4014311 149.1.1.0 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 0.62 52.0 2.96e-01 92.5% 78.4%
3597372 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.61 52.0 3.32e-01 100.0% 89.5%
4344379 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.61 51.0 2.90e-01 92.5% 75.6%
3724943 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.60 50.0 2.90e-01 92.5% 77.8%
3251426 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.59 48.0 4.35e-01 100.0% 65.3%
4227453 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.58 48.0 2.80e-01 92.5% 76.6%
4144504 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.58 48.0 2.80e-01 94.3% 76.0%
4019084 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.58 47.0 2.75e-01 92.5% 77.0%
3687901 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.57 47.0 2.73e-01 92.5% 78.1%
3199389 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.56 45.0 2.89e-01 90.6% 92.2%
4016749 5.1.4.348 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_1st 0.56 41.0 2.51e-01 81.1% 35.4%
5060858 2011.1.1.8 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.54 45.0 2.77e-01 100.0% 33.5%
3927305 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 38.0 3.14e-01 100.0% 36.4%
2420857 10.1.1.55 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PL28 0.54 47.0 3.04e-01 100.0% 32.3%
3195147 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.54 37.0 2.69e-01 75.5% 96.2%
4119707 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.53 48.0 2.78e-01 100.0% 73.6%
4572737 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.53 46.0 2.90e-01 98.1% 74.8%
4133217 10.1.1.55 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PL28 0.53 46.0 2.95e-01 100.0% 31.7%
4012562 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.53 43.0 2.59e-01 92.5% 50.4%
3611989 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 40.0 3.01e-01 100.0% 31.3%
5011560 239.4.1.0 ↗ beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain 0.52 45.0 3.65e-01 100.0% 51.4%
3502254 1.1.1.19 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD 0.52 36.0 3.05e-01 98.1% 41.1%
3972818 327.16.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin 0.52 38.0 2.50e-01 84.9% 91.9%
3838980 5084.1.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.51 43.0 3.07e-01 100.0% 40.6%
3842576 220.1.1.67 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.51 36.0 2.92e-01 100.0% 35.0%
3957920 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.50 45.0 2.73e-01 100.0% 82.4%
3838442 4023.1.1.0 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.50 39.0 3.36e-01 94.3% 66.0%
D2 medium residues 102-169
PDB
Domain cluster: rep: Filtrate_w_scaffold_6_prodigal-single.1__X__X__00314__D95-163
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07230.17 best Portal_T4 101.8 5.30e-29 100.0% 15.6%
D3 medium residues 175-238
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07230.17 best Portal_T4 61.8 7.30e-17 95.3% 13.5%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4am6A03 3.30.420.580 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.50 43.0 2.84e-01 95.3% 78.3%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3935113 106.1.1.0 ↗ alpha arrays › Globin-like › Globin-like › Globin-like 0.57 46.0 3.46e-01 92.2% 100.0%