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OM971648.1__UQJ95249.1__IANJMKHF_00343__00343

Bact-Vir

OM971648.1__UQJ95249.1__IANJMKHF_00343__00343

Identity

Accession:
OM971648 ↗
Kingdom:
phage

Quality

86.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Slopekvirus› Klebsiella_phage_CPRSA

TaxID: 2935722

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 10-49
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6imjA01 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.87 76.0 4.81e-01 97.5% 22.9%
6rarI01 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.81 68.0 4.33e-01 97.5% 23.1%
4d05A01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.80 67.0 5.59e-01 100.0% 52.6%
3l2pA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.79 67.0 5.66e-01 100.0% 88.7%
1x31B02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.64 45.0 3.09e-01 77.5% 80.5%
3ijmA00 3.90.1570.20 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.62 46.0 3.23e-01 100.0% 24.0%
1nj4A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.58 44.0 2.80e-01 92.5% 62.0%
3d8pB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 46.0 3.22e-01 100.0% 40.6%
6l2cB00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.54 41.0 2.47e-01 100.0% 42.1%
1ckmA03 4.10.87.10 Few Secondary Structures › Irregular › mRNA Capping Enzyme; Chain › mRNA Capping Enzyme; domain 3 0.53 42.0 3.95e-01 100.0% 77.8%
6p66D01 3.40.91.30 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.51 41.0 3.11e-01 95.0% 44.0%
3bn7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 44.0 3.27e-01 97.5% 43.1%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3947455 206.1.3.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M 0.85 73.0 4.56e-01 100.0% 18.6%
3387834 206.1.3.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M 0.82 72.0 4.60e-01 100.0% 22.2%
3629982 102.1.3.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain 0.62 47.0 3.34e-01 85.0% 50.0%
4933590 2008.1.1.3 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Hjc 0.60 43.0 3.11e-01 80.0% 54.6%
3392468 101.21.1.1 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.60 47.0 3.49e-01 90.0% 87.3%
4471553 2004.1.1.63 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › FtsK_SpoIIIE 0.58 42.0 2.55e-01 82.5% 45.0%
4991375 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.57 48.0 3.48e-01 95.0% 33.9%
3505928 304.103.1.5 ↗ a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › TM1586_NiRdase 0.57 47.0 3.55e-01 90.0% 41.1%
3297123 206.1.3.12 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › TTL 0.56 43.0 2.73e-01 92.5% 15.2%
3949768 4019.1.1.3 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.53 45.0 3.12e-01 97.5% 45.0%
4200200 7523.1.1.10 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › HisG 0.52 42.0 3.01e-01 95.0% 70.0%
D2 medium residues 56-90
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.84 58.0 5.08e-01 100.0% 49.1%
7e52A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.83 63.0 4.27e-01 100.0% 23.4%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.81 60.0 5.01e-01 100.0% 46.8%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.76 56.0 5.26e-01 100.0% 64.4%
1lgpA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.64 51.0 3.69e-01 97.1% 36.3%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.62 48.0 4.34e-01 100.0% 60.7%
3f02B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.62 50.0 3.74e-01 100.0% 38.0%
1auvB02 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 45.0 3.33e-01 100.0% 29.3%
3htrA00 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.59 46.0 3.55e-01 100.0% 35.7%
4h1sB02 3.90.780.10 Alpha Beta › Alpha-Beta Complex › 5'-nucleotidase; domain 2 › 5'-Nucleotidase, C-terminal domain 0.59 43.0 2.82e-01 94.3% 48.8%
2zdjA00 3.10.450.450 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 44.0 3.83e-01 100.0% 50.0%
6gmhI02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.59 45.0 3.74e-01 97.1% 46.4%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.58 46.0 4.31e-01 100.0% 70.8%
4edgA01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.57 44.0 3.14e-01 100.0% 29.1%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 38.0 3.50e-01 100.0% 49.2%
3kreA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 41.0 2.97e-01 97.1% 80.7%
3wknF00 6.20.50.120 Special › Other non-globular › N-terminal domain of TfIIb › 0.53 39.0 3.77e-01 100.0% 71.7%
1dl5A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 39.0 2.55e-01 88.6% 61.2%
4l2iA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.53 35.0 2.38e-01 100.0% 14.6%
1edzA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 38.0 2.62e-01 97.1% 19.2%
2w01B00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.51 38.0 2.53e-01 97.1% 69.0%
1xi7A00 4.10.40.20 Few Secondary Structures › Irregular › Omega-AgatoxinV › 0.50 37.0 3.57e-01 94.3% 70.2%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3311205 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.88 73.0 4.75e-01 100.0% 22.8%
3413048 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.80 62.0 3.45e-01 100.0% 6.4%
3225123 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.72 53.0 5.03e-01 100.0% 66.7%
3511010 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.71 58.0 5.86e-01 97.1% 94.3%
5049278 169.1.1.1 ↗ alpha complex topology › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › AFOR_C 0.65 53.0 3.02e-01 100.0% 8.5%
3710326 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.65 49.0 3.91e-01 100.0% 38.8%
4930124 169.1.1.1 ↗ alpha complex topology › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › AFOR_C 0.64 51.0 2.94e-01 100.0% 9.1%
5051086 169.1.1.1 ↗ alpha complex topology › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › AFOR_C 0.63 49.0 2.87e-01 100.0% 9.3%
3621358 375.1.1.7 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.63 47.0 4.12e-01 100.0% 50.8%
3447558 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.60 47.0 3.24e-01 100.0% 41.2%
4206082 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.59 46.0 3.30e-01 100.0% 28.5%
3411718 805.1.1.1 ↗ a+b complex topology › 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain › 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain › 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain › 5_nucleotid_C 0.58 45.0 2.89e-01 97.1% 47.9%
3649929 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.58 44.0 3.49e-01 94.3% 40.0%
3169198 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.54 36.0 3.62e-01 100.0% 85.7%
3391411 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 40.0 3.98e-01 100.0% 90.0%
3784922 229.1.1.1 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 0.51 36.0 2.88e-01 100.0% 74.5%