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OM971648.1__UQJ95274.1__IANJMKHF_00369__00368

Bact-Vir

OM971648.1__UQJ95274.1__IANJMKHF_00369__00368

Identity

Accession:
OM971648 ↗
Kingdom:
phage

Quality

72.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Slopekvirus› Klebsiella_phage_CPRSA

TaxID: 2935722

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-74
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ijfX00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.80 65.0 5.21e-01 87.7% 53.7%
2fr5A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.79 66.0 5.11e-01 90.8% 47.1%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.70 55.0 5.21e-01 86.2% 73.4%
2i52B00 3.30.1300.20 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) 0.66 53.0 4.40e-01 89.2% 60.3%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 4.56e-01 72.3% 81.0%
2iecD00 3.30.1300.20 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) 0.65 52.0 4.32e-01 89.2% 58.1%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 48.0 3.80e-01 83.1% 40.1%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 43.0 3.46e-01 83.1% 36.7%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 48.0 3.62e-01 84.6% 34.9%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.63 51.0 4.08e-01 92.3% 92.0%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 51.0 3.33e-01 89.2% 33.1%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 47.0 3.52e-01 84.6% 34.3%
2ia1A01 3.30.500.20 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains 0.62 45.0 3.70e-01 93.8% 42.0%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 42.0 4.25e-01 72.3% 81.0%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 41.0 4.21e-01 72.3% 82.3%
1g5hA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.60 47.0 3.12e-01 95.4% 19.7%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 54.0 4.94e-01 100.0% 94.0%
1ygyB03 3.30.1330.90 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › D-3-phosphoglycerate dehydrogenase; domain 3 0.59 49.0 3.95e-01 96.9% 91.4%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 40.0 4.05e-01 72.3% 77.3%
6mlyB01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 48.0 3.23e-01 93.8% 48.9%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 38.0 3.80e-01 72.3% 75.4%
3zqsA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.56 36.0 3.35e-01 95.4% 48.9%
4n6tA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 38.0 3.68e-01 75.4% 79.7%
3d9wA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.55 37.0 3.24e-01 73.8% 44.1%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 3.81e-01 72.3% 73.8%
1luiA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 41.0 3.56e-01 83.1% 57.4%
1so7A00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.54 44.0 2.82e-01 92.3% 25.8%
6u5uG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.54 42.0 3.47e-01 90.8% 71.2%
4hsqA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 43.0 3.45e-01 95.4% 86.8%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.53 37.0 3.98e-01 81.5% 98.0%
2uvaG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.53 42.0 3.42e-01 92.3% 70.6%
4lduA02 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.52 38.0 3.27e-01 78.5% 68.9%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.52 37.0 3.50e-01 76.9% 65.4%
2hesX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 38.0 2.58e-01 84.6% 29.9%
4gzvA00 2.40.128.490 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 0.51 43.0 3.47e-01 98.5% 88.5%
3khpD01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 38.0 3.11e-01 84.6% 93.4%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.50 36.0 3.04e-01 80.0% 42.4%
1floC02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.50 37.0 2.46e-01 78.5% 56.4%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3948020 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.68 52.0 4.45e-01 84.6% 54.5%
222972 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.67 56.0 5.06e-01 92.3% 68.5%
4648883 231.1.2.1 ↗ a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ 0.67 48.0 3.15e-01 76.9% 69.8%
4115704 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.65 47.0 4.51e-01 76.9% 69.3%
169663 9.1.1.11 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.64 48.0 3.69e-01 83.1% 36.3%
4345080 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.64 44.0 4.42e-01 72.3% 78.5%
4804225 9.1.1.11 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.63 48.0 4.44e-01 84.6% 66.7%
3599172 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 43.0 4.39e-01 72.3% 78.5%
3608236 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.63 43.0 4.36e-01 72.3% 78.5%
4213539 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.63 43.0 4.34e-01 72.3% 78.5%
4101580 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.62 43.0 4.33e-01 72.3% 78.5%
3306779 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.62 43.0 4.32e-01 72.3% 78.5%
3265170 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.62 42.0 4.29e-01 72.3% 78.5%
842 9.1.1.11 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.62 47.0 3.56e-01 84.6% 34.7%
4073200 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.62 42.0 4.28e-01 72.3% 80.0%
4292289 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.61 42.0 4.27e-01 72.3% 78.5%
4284764 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.61 43.0 4.33e-01 73.8% 80.0%
4037383 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.61 42.0 4.23e-01 72.3% 78.5%
4051625 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.61 42.0 4.22e-01 72.3% 78.5%
3950208 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.60 41.0 4.20e-01 72.3% 78.5%
3501948 2007.1.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.60 41.0 2.99e-01 84.6% 24.1%
4104219 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.60 41.0 4.16e-01 72.3% 80.0%
4054729 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.60 41.0 3.95e-01 70.8% 64.0%
3407007 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.60 46.0 3.47e-01 84.6% 34.1%
3590827 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.59 41.0 4.11e-01 72.3% 78.5%
4028728 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.59 41.0 4.41e-01 81.5% 87.3%
4343392 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 43.0 3.63e-01 76.9% 49.1%
4135259 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.59 40.0 4.09e-01 72.3% 80.0%
142633 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.59 40.0 4.05e-01 72.3% 77.3%
3973870 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 45.0 3.08e-01 86.2% 71.0%
3274683 2003.1.2.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 0.58 40.0 2.57e-01 72.3% 41.9%
4014828 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 40.0 4.24e-01 81.5% 89.1%
3954323 2003.1.5.53 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr 0.57 49.0 3.17e-01 100.0% 27.8%
4970648 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.56 38.0 4.10e-01 70.8% 100.0%
3266046 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.56 40.0 4.16e-01 76.9% 85.0%
3923846 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.56 50.0 3.74e-01 100.0% 71.2%
3961321 223.3.1.2 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Peptidase_S11 0.56 37.0 3.22e-01 75.4% 40.9%
5050831 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 40.0 3.18e-01 80.0% 95.3%
3962202 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.55 47.0 3.97e-01 98.5% 94.8%
185991 6023.1.1.0 ↗ beta barrels › Restriction endonuclease PabI › Restriction endonuclease PabI › Restriction endonuclease PabI 0.55 40.0 2.75e-01 78.5% 57.8%
3888744 3570.1.1.0 ↗ a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily 0.54 39.0 3.24e-01 75.4% 46.1%
3913519 216.1.1.9 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › FANCL_d2 0.54 38.0 3.25e-01 81.5% 44.8%
3784777 220.1.1.32 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind 0.54 42.0 3.29e-01 92.3% 47.9%
3351841 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.54 39.0 3.21e-01 80.0% 40.3%
3220796 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.53 43.0 3.28e-01 98.5% 38.0%
3967995 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.53 47.0 2.86e-01 100.0% 17.4%
3964928 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.53 36.0 3.41e-01 73.8% 87.1%
3782550 5.1.7.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.52 43.0 2.48e-01 100.0% 53.4%
3736590 9.14.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W 0.52 38.0 3.33e-01 81.5% 46.0%
3386075 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 45.0 3.53e-01 98.5% 87.1%
3370313 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.51 42.0 3.28e-01 98.5% 46.7%