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OM982669.1__UPI12189.1__X__00211

Bact-Vir

OM982669.1__UPI12189.1__X__00211

Identity

Accession:
OM982669 ↗
Kingdom:
phage

Quality

63.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Nitunavirus› Bacillus_phage_SBSphiJ2

TaxID: 2930339

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 35-100
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jnrB02 6.20.260.10 Special › Other non-globular › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Adenylylsulphate reductase, beta subunit, C-terminal domain 0.72 38.0 3.55e-01 100.0% 42.2%
3d31A03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.70 39.0 3.80e-01 78.8% 49.3%
3mzkB01 6.20.50.30 Special › Other non-globular › N-terminal domain of TfIIb › 0.65 34.0 4.10e-01 86.4% 84.2%
2wjvD02 4.10.80.160 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › 0.61 28.0 3.62e-01 72.7% 96.3%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.60 47.0 3.49e-01 89.4% 46.5%
4emoC00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 49.0 4.16e-01 95.5% 69.0%
1b7yB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 40.0 3.33e-01 72.7% 74.1%
3k7uC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 41.0 3.60e-01 75.8% 86.7%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 41.0 4.33e-01 80.3% 86.2%
4ewcA01 2.20.25.560 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.56 40.0 4.42e-01 97.0% 94.3%
7jsnA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.56 48.0 3.45e-01 100.0% 97.1%
4h5iB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 49.0 3.12e-01 100.0% 94.8%
4gyiA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 40.0 3.59e-01 78.8% 90.8%
2daqA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 3.65e-01 90.9% 90.0%
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 37.0 3.74e-01 95.5% 73.5%
1gydB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 43.0 2.91e-01 98.5% 87.6%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.53 47.0 4.11e-01 98.5% 79.4%
4at7B02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.53 44.0 3.19e-01 93.9% 66.5%
1q8iA03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 40.0 3.08e-01 89.4% 100.0%
1hdhA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 44.0 4.23e-01 98.5% 96.1%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 31.0 3.17e-01 81.8% 57.8%
2e7zA01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.52 31.0 3.26e-01 90.9% 64.9%
3luuA00 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.52 43.0 3.95e-01 92.4% 73.0%
5hsqA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 37.0 3.01e-01 74.2% 46.5%
1nltA02 2.10.230.10 Mainly Beta › Ribbon › Chaperone, DNAj Protein; Chain A › Heat shock protein DnaJ, cysteine-rich domain 0.52 31.0 3.20e-01 93.9% 59.1%
2x5gA00 3.30.720.60 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.52 42.0 3.89e-01 95.5% 94.5%
1ijqA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 38.0 2.59e-01 98.5% 20.9%
5inwA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 37.0 3.27e-01 80.3% 59.3%
7d58G02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 37.0 3.29e-01 78.8% 65.3%
2f96A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 45.0 3.20e-01 100.0% 82.1%
2e3vA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 43.0 3.72e-01 95.5% 88.3%
5oyhD00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.50 37.0 2.81e-01 89.4% 29.7%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4951344 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.72 40.0 3.33e-01 78.8% 31.3%
3401499 2007.1.7.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes 0.70 41.0 3.10e-01 78.8% 25.3%
5070586 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.70 37.0 2.96e-01 97.0% 27.2%
3517323 3131.1.1.2 ↗ a+b two layers › FYR domain › FYR domain › FYR domain › FYRN 0.65 49.0 4.24e-01 83.3% 52.7%
3883654 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.65 56.0 4.10e-01 98.5% 67.9%
3394198 2007.1.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.64 40.0 2.96e-01 78.8% 24.0%
4950191 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.64 54.0 4.36e-01 92.4% 69.6%
3588650 6161.1.1.2 ↗ a+b two layers › Uncharacterized virus protein A-100 › Uncharacterized virus protein A-100 › Uncharacterized virus protein A-100 › SWIM 0.64 47.0 4.58e-01 80.3% 78.7%
5012312 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 48.0 3.66e-01 83.3% 34.4%
3390953 2007.1.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.63 38.0 2.89e-01 78.8% 25.0%
4931496 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.63 52.0 4.29e-01 92.4% 71.7%
3954510 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 50.0 4.22e-01 90.9% 75.7%
4941253 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.62 52.0 4.58e-01 95.5% 84.0%
4968394 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.61 51.0 4.45e-01 95.5% 88.6%
3289908 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.61 49.0 3.96e-01 89.4% 61.5%
5020520 319.1.1.23 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29697 0.60 46.0 4.15e-01 100.0% 60.0%
3175364 223.2.1.20 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.60 41.0 3.15e-01 77.3% 29.7%
4032084 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.60 52.0 4.70e-01 100.0% 87.4%
3956055 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.60 49.0 4.15e-01 90.9% 70.9%
4937559 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.60 51.0 4.60e-01 95.5% 94.4%
4941310 3504.3.1.1 ↗ beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.59 49.0 3.77e-01 92.4% 72.3%
4041550 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.59 51.0 4.57e-01 100.0% 91.6%
4931497 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.59 50.0 4.21e-01 97.0% 75.7%
5070652 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.58 51.0 4.49e-01 100.0% 94.0%
5066117 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.58 48.0 4.35e-01 95.5% 95.8%
3273196 223.2.1.1 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.58 44.0 3.48e-01 84.8% 90.7%
4928787 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.58 44.0 4.09e-01 87.9% 66.3%
3922015 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.58 51.0 4.05e-01 100.0% 68.9%
3290954 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.57 48.0 4.30e-01 95.5% 83.2%
3607454 220.1.1.306 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_22 0.57 48.0 4.26e-01 97.0% 84.0%
4931272 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.57 50.0 4.46e-01 100.0% 91.6%
4950192 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.57 50.0 4.65e-01 100.0% 98.8%
3474858 719.1.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XRCC4 0.56 40.0 3.47e-01 75.8% 82.9%
4979002 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.56 49.0 4.25e-01 100.0% 87.6%
4192693 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.56 49.0 4.51e-01 98.5% 94.1%
3956353 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.56 48.0 4.47e-01 100.0% 92.9%
3729167 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 41.0 3.54e-01 77.3% 90.0%
3290300 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.56 47.0 4.42e-01 98.5% 96.5%
4041551 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.55 47.0 3.92e-01 97.0% 68.3%
4034140 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.54 47.0 4.40e-01 100.0% 94.1%
5058109 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.54 47.0 4.28e-01 100.0% 87.8%
3407322 220.1.1.52 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.52 44.0 3.94e-01 100.0% 81.0%
3696407 4121.1.1.7 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › PF26616 0.51 44.0 3.05e-01 100.0% 52.3%
3547439 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.50 36.0 2.49e-01 78.8% 23.0%
3624930 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 38.0 3.32e-01 86.4% 99.1%
2128338 205.1.1.49 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_6, Fer4_7 0.50 39.0 3.47e-01 98.5% 56.7%