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OM982674.1__UPI13442.1__X__00217

Bact-Vir

OM982674.1__UPI13442.1__X__00217

Identity

Accession:
OM982674 ↗
Kingdom:
phage

Quality

82.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Nitunavirus› Bacillus_phage_SBSphiJ7

TaxID: 2930344

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-61
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 48.0 3.79e-01 98.2% 56.4%
1xhhA00 2.60.40.1900 Mainly Beta › Sandwich › Immunoglobulin-like › Beta-microseminoprotein (PSP94) domain 0.56 37.0 3.22e-01 100.0% 41.8%
2l1sA00 3.10.450.160 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › inner membrane protein cigr 0.56 39.0 3.48e-01 100.0% 49.4%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.56 39.0 3.42e-01 96.4% 46.3%
2jsnA00 2.30.42.40 Mainly Beta › Roll › Pdz3 Domain › 0.55 39.0 3.32e-01 90.9% 43.8%
3a27A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 37.0 2.46e-01 72.7% 45.7%
1hxnA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.52 37.0 2.53e-01 76.4% 38.1%
7cr6D01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.52 35.0 3.16e-01 98.2% 47.6%
3c12A01 2.30.30.910 Mainly Beta › Roll › SH3 type barrels. › 0.52 38.0 3.92e-01 100.0% 84.3%
5ucoA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 36.0 2.78e-01 78.2% 52.9%
1hcdA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 40.0 3.39e-01 100.0% 96.6%
3ck2A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.51 41.0 2.95e-01 92.7% 37.9%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5072584 2003.1.5.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 0.65 44.0 2.75e-01 70.9% 42.0%
3666644 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.64 37.0 4.34e-01 98.2% 88.6%
3635221 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 45.0 2.72e-01 76.4% 22.1%
3649673 2004.1.1.26 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.61 47.0 3.08e-01 92.7% 19.1%
4854353 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.58 36.0 3.74e-01 78.2% 66.0%
4139409 375.14.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.57 39.0 4.21e-01 100.0% 100.0%
3359607 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.57 50.0 4.23e-01 98.2% 97.8%
4027519 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.55 32.0 3.72e-01 76.4% 88.6%
3566388 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 33.0 3.60e-01 72.7% 69.8%
4282578 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.55 34.0 3.03e-01 81.8% 42.5%
3869223 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 33.0 2.95e-01 72.7% 37.5%
3762208 389.1.1.7 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_CA 0.53 31.0 3.01e-01 89.1% 47.7%
3524423 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 33.0 3.40e-01 100.0% 61.8%
5033222 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.53 36.0 3.05e-01 90.9% 38.1%
5020208 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 39.0 4.06e-01 100.0% 88.0%
3345189 2003.1.5.31 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.53 41.0 2.67e-01 87.3% 95.3%
5037456 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.53 38.0 3.00e-01 83.6% 86.2%
3269122 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.51 37.0 3.74e-01 80.0% 92.7%
3786078 109.4.1.1764 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28917 0.51 40.0 2.40e-01 92.7% 19.2%
D2 high residues 66-148
PDB
Domain cluster: rep: MK448740.1__QBX17560.1__Javan367_0025__00025__D3-70
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ox7A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.66 50.0 5.40e-01 88.0% 95.7%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.63 45.0 3.57e-01 75.9% 100.0%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 47.0 5.01e-01 78.3% 100.0%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 47.0 5.03e-01 89.2% 91.8%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 42.0 3.98e-01 74.7% 58.4%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.61 43.0 4.24e-01 86.7% 68.1%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 45.0 4.42e-01 80.7% 80.4%
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 40.0 4.19e-01 72.3% 79.5%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.58 40.0 3.60e-01 71.1% 79.5%
2p1gA02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.58 47.0 4.47e-01 89.2% 98.0%
1n26A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 38.0 3.91e-01 85.5% 70.5%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 42.0 4.35e-01 88.0% 82.3%
4rlzA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.58 45.0 4.16e-01 85.5% 99.1%
4qv2A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.57 47.0 4.23e-01 90.4% 95.8%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.57 42.0 4.33e-01 77.1% 100.0%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 41.0 4.51e-01 90.4% 100.0%
2mfaA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.56 30.0 3.47e-01 79.5% 73.7%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 36.0 3.91e-01 71.1% 85.1%
4rudA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.52 28.0 3.20e-01 74.7% 69.0%
1ne8A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.52 43.0 3.86e-01 90.4% 85.3%
2mj0A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.52 29.0 3.15e-01 74.7% 65.2%
2o6cA00 2.60.40.2480 Mainly Beta › Sandwich › Immunoglobulin-like › Periplasmic metal-binding protein Tp34-type 0.51 41.0 3.42e-01 90.4% 74.7%
3g7dA03 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 43.0 3.76e-01 91.6% 95.2%
3lzqA00 2.60.40.2480 Mainly Beta › Sandwich › Immunoglobulin-like › Periplasmic metal-binding protein Tp34-type 0.51 42.0 3.45e-01 92.8% 76.4%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.50 41.0 3.53e-01 91.6% 70.3%
3t2lA01 2.60.40.2620 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like 0.50 41.0 3.58e-01 91.6% 74.0%
3r5lA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 34.0 3.11e-01 71.1% 51.7%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4024274 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.71 56.0 5.16e-01 83.1% 74.3%
3954254 4.1.1.387 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Rv0428c 0.68 50.0 5.52e-01 91.6% 100.0%
3411714 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 44.0 4.75e-01 73.5% 78.6%
3373583 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 47.0 5.03e-01 72.3% 97.1%
3258610 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 52.0 5.33e-01 90.4% 86.3%
4139778 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 52.0 5.51e-01 91.6% 94.5%
3928136 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 45.0 5.16e-01 71.1% 100.0%
3185321 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.66 49.0 5.18e-01 79.5% 98.7%
3502388 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 45.0 4.70e-01 72.3% 78.7%
3559960 2006.1.6.66 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF4537 0.65 51.0 5.54e-01 85.5% 100.0%
3609031 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 51.0 4.76e-01 86.7% 69.0%
3826751 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.64 44.0 4.53e-01 71.1% 83.7%
2755606 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.64 58.0 4.19e-01 100.0% 53.5%
3927663 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 40.0 4.46e-01 91.6% 83.1%
3941320 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.60 46.0 4.79e-01 100.0% 90.7%
3180042 1.1.7.24 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.60 47.0 4.21e-01 84.3% 97.4%
4864011 1.1.7.41 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom 0.59 47.0 4.37e-01 86.7% 93.3%
3879755 4.1.1.169 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4819 0.57 46.0 4.29e-01 86.7% 79.0%
3220497 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.57 43.0 3.21e-01 80.7% 76.4%
3464137 4.1.1.152 ↗ beta barrels › SH3 › SH3 › SH3 › DUF1262 0.57 49.0 3.91e-01 94.0% 94.5%
3967527 4216.1.1.1 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › HemS 0.57 43.0 3.49e-01 83.1% 70.4%
4085589 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.56 44.0 4.54e-01 85.5% 100.0%
3934695 220.4.1.0 ↗ beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins 0.55 38.0 3.71e-01 73.5% 88.4%
3711953 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.54 41.0 3.76e-01 81.9% 95.7%
3744112 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.54 43.0 3.96e-01 86.7% 98.2%
4989205 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.54 40.0 3.23e-01 81.9% 85.6%
3699180 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.54 40.0 3.52e-01 79.5% 92.0%
4181458 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.53 41.0 3.80e-01 84.3% 94.5%
3587296 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 45.0 3.88e-01 92.8% 83.8%
3842233 1.1.7.69 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.52 40.0 3.92e-01 83.1% 94.4%
3264641 2498.1.1.14 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.52 37.0 2.37e-01 78.3% 30.2%
3263949 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 35.0 3.43e-01 85.5% 63.2%
4012802 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 41.0 3.83e-01 90.4% 100.0%
3715657 241.10.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.51 36.0 3.45e-01 74.7% 70.7%
3965887 11.1.1.457 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › FixH 0.50 36.0 3.35e-01 74.7% 81.9%
4537757 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.50 41.0 3.69e-01 91.6% 91.7%
3240167 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.50 38.0 2.75e-01 88.0% 46.7%