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ON005621.1__UTC28018.1__X__00076

Bact-Vir

ON005621.1__UTC28018.1__X__00076

Identity

Accession:
ON005621 ↗
Kingdom:
phage

Quality

83.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mesyanzhinovviridae› Ghuizhouvirus› Stenotrophomonas_phage_A1432

TaxID: 2930315

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-78
PDB
Domain cluster: rep: NC_024356.1__YP_009042710.1__IME_062__00062__D2-67
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 53.0 4.87e-01 100.0% 64.0%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 52.0 4.88e-01 100.0% 67.5%
3besR02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 43.0 3.60e-01 100.0% 39.6%
1x67A01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.64 43.0 3.50e-01 70.1% 60.2%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.64 41.0 4.14e-01 100.0% 66.7%
1rz3A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 51.0 3.81e-01 94.0% 51.4%
3afoB02 2.60.200.30 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 0.61 54.0 4.30e-01 100.0% 97.1%
6hmjA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 47.0 4.13e-01 86.6% 87.6%
4gniA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.60 50.0 4.66e-01 94.0% 90.7%
6rzqA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.60 49.0 4.59e-01 92.5% 88.2%
1q8bA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 37.0 3.41e-01 88.1% 45.2%
5umbA02 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.59 48.0 4.67e-01 91.0% 94.7%
3d2fA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.59 48.0 4.49e-01 91.0% 86.9%
3hnoA01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 40.0 2.86e-01 73.1% 38.0%
1s6lA02 3.15.10.60 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Alkylmercury lyase 0.58 39.0 3.21e-01 70.1% 82.2%
1jcfA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.58 49.0 4.72e-01 95.5% 88.2%
5d1oA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.57 36.0 3.58e-01 100.0% 58.9%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 44.0 3.58e-01 89.6% 85.4%
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.55 38.0 3.09e-01 100.0% 36.8%
2b5iC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 3.80e-01 86.6% 95.8%
6zwwC01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 37.0 2.80e-01 73.1% 75.7%
1sq2N00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.28e-01 100.0% 46.4%
1cb8A03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.52 45.0 3.81e-01 95.5% 86.4%
3eb7A03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.52 43.0 3.22e-01 97.0% 97.5%
2i46A00 2.40.50.960 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 37.0 2.92e-01 76.1% 40.8%
1u0kA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.52 43.0 3.58e-01 97.0% 93.2%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.52 39.0 3.95e-01 100.0% 83.6%
1k8kA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.51 41.0 3.80e-01 92.5% 84.8%
3zq5A03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.51 39.0 3.01e-01 82.1% 50.3%
1i5eA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 36.0 2.63e-01 74.6% 93.3%
5u3fB01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.51 39.0 3.12e-01 83.6% 89.3%
1p1lA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 45.0 3.93e-01 100.0% 81.4%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.50 34.0 3.18e-01 100.0% 53.3%
2qrdE01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.50 39.0 3.01e-01 91.0% 82.2%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5017559 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 75.0 7.64e-01 100.0% 100.0%
4231372 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.80 73.0 7.20e-01 100.0% 97.1%
4448678 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.78 70.0 6.77e-01 100.0% 94.7%
4147528 4.1.1.307 ↗ beta barrels › SH3 › SH3 › SH3 › PF26132 0.76 68.0 6.71e-01 100.0% 98.6%
4026408 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.69 52.0 4.57e-01 98.5% 54.0%
157624 4.1.1.47 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin6 0.69 53.0 4.87e-01 100.0% 64.0%
3328647 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.68 53.0 4.88e-01 100.0% 65.9%
3989574 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 48.0 4.51e-01 97.0% 60.0%
4163661 4.1.1.446 ↗ beta barrels › SH3 › SH3 › SH3 › PF30222 0.68 54.0 5.38e-01 100.0% 85.3%
3173156 4.1.1.344 ↗ beta barrels › SH3 › SH3 › SH3 › PF31193 0.67 51.0 4.86e-01 100.0% 70.0%
3875549 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.67 38.0 2.73e-01 97.0% 19.5%
3598125 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 49.0 4.78e-01 100.0% 72.0%
3625817 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.65 50.0 4.74e-01 100.0% 70.0%
158829 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.64 43.0 3.40e-01 70.1% 54.8%
4293453 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 48.0 4.59e-01 100.0% 68.8%
3507639 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.62 47.0 4.68e-01 100.0% 78.6%
3274367 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.62 50.0 3.66e-01 91.0% 38.4%
4270910 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 46.0 4.56e-01 100.0% 78.6%
4087011 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 52.0 4.67e-01 100.0% 68.4%
3255532 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.60 50.0 3.58e-01 94.0% 37.1%
3692923 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.60 50.0 3.55e-01 94.0% 36.2%
5076347 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.60 43.0 4.08e-01 79.1% 76.5%
4024159 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.60 49.0 3.38e-01 92.5% 43.8%
3655539 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.59 48.0 3.68e-01 91.0% 41.9%
3203652 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.59 49.0 3.05e-01 94.0% 64.6%
3443252 263.1.1.0 ↗ a+b three layers › SRF-like › SRF-like › SRF-like 0.59 37.0 4.19e-01 86.6% 95.6%
3402776 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.59 48.0 3.46e-01 94.0% 36.2%
3937147 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.57 40.0 2.57e-01 74.6% 72.7%
4996628 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 46.0 3.29e-01 91.0% 36.3%
4041376 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.57 43.0 4.10e-01 98.5% 68.8%
4974146 75.1.1.0 ↗ beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like 0.55 48.0 3.70e-01 100.0% 98.7%
3939755 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.54 44.0 3.49e-01 92.5% 81.8%
3871796 11.2.1.76 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PF28335 0.53 42.0 3.66e-01 86.6% 94.3%
3716287 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.53 46.0 3.95e-01 100.0% 91.8%
4377781 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.53 44.0 4.20e-01 100.0% 80.0%
7496 286.1.1.2 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.52 41.0 3.42e-01 91.0% 86.8%
4136811 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.52 39.0 2.79e-01 88.1% 25.6%
3989572 223.1.1.27 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.52 40.0 3.24e-01 89.6% 62.4%
3879076 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.51 43.0 4.16e-01 97.0% 92.5%
4946479 75.1.1.0 ↗ beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like 0.51 45.0 3.77e-01 100.0% 98.3%
3783767 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.50 40.0 2.77e-01 91.0% 29.3%