Back to structures

ON014753.1__UQS94846.1__Pam1_26__00026

Bact-Vir

ON014753.1__UQS94846.1__Pam1_26__00026

Identity

Accession:
ON014753 ↗
Kingdom:
phage

Quality

72.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-76
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.85 61.0 6.13e-01 74.3% 76.7%
4hfkB00 1.20.120.1620 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.83 48.0 4.31e-01 95.9% 43.9%
4fppB01 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.78 55.0 5.65e-01 74.3% 77.5%
2pvqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.77 54.0 4.75e-01 73.0% 58.5%
2cazC00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.77 55.0 5.81e-01 75.7% 92.2%
4mtxD00 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.76 55.0 5.05e-01 75.7% 58.9%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.75 53.0 5.37e-01 100.0% 73.3%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.75 62.0 5.79e-01 90.5% 72.5%
3vkgB03 1.20.58.1120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 0.75 63.0 4.94e-01 100.0% 44.2%
6a3kA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.74 56.0 4.59e-01 98.6% 45.7%
2fzfA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.74 68.0 5.32e-01 100.0% 80.7%
3r2qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.74 51.0 4.47e-01 77.0% 47.8%
2rkhA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.72 63.0 6.25e-01 100.0% 90.8%
4wzxA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.72 52.0 5.18e-01 100.0% 74.7%
3lphC00 6.10.140.630 Special › Helix non-globular › Helix Hairpins › 0.70 48.0 5.28e-01 71.6% 93.1%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.70 50.0 5.18e-01 74.3% 85.1%
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 63.0 5.78e-01 100.0% 80.2%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 63.0 5.86e-01 100.0% 81.5%
6xz3A01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.69 60.0 5.14e-01 100.0% 60.7%
1dowA00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.69 55.0 4.02e-01 100.0% 31.2%
8fbnB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.69 55.0 3.98e-01 89.2% 53.6%
1r9dA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.69 63.0 3.54e-01 98.6% 11.3%
1kz7A01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.68 55.0 4.10e-01 90.5% 82.9%
2rgnB01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.67 55.0 4.03e-01 90.5% 76.5%
5a0uA01 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.67 62.0 3.46e-01 98.6% 11.3%
2oerA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.66 59.0 4.46e-01 100.0% 45.8%
1aueB00 1.20.120.150 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › FKBP12-rapamycin binding domain 0.66 39.0 3.59e-01 94.6% 44.7%
2d2sA01 1.20.58.1210 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain 0.66 52.0 4.47e-01 85.1% 75.0%
3mzvA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.66 55.0 3.69e-01 95.9% 33.7%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 44.0 4.72e-01 71.6% 85.5%
7vkcA01 1.10.1070.20 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › 0.65 49.0 3.85e-01 97.3% 37.0%
1bgfA00 1.10.532.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain 0.65 57.0 4.69e-01 100.0% 55.6%
4z5qA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.65 48.0 3.09e-01 79.7% 59.2%
4aidA02 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.64 43.0 4.20e-01 87.8% 62.2%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 46.0 4.94e-01 85.1% 96.6%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 46.0 4.69e-01 75.7% 81.9%
3uo2B02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.64 49.0 4.72e-01 100.0% 73.8%
2dfkC01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.64 51.0 3.76e-01 90.5% 77.4%
3purA03 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 47.0 4.13e-01 97.3% 53.6%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 54.0 4.87e-01 100.0% 70.3%
2z0qA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.62 56.0 4.09e-01 100.0% 41.5%
3q2qA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.60 52.0 3.47e-01 100.0% 34.4%
2pybA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.59 51.0 4.15e-01 100.0% 81.5%
2i0mA02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.59 50.0 4.55e-01 100.0% 71.3%
6qv3A05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.79e-01 87.8% 62.4%
1navA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.54 47.0 3.25e-01 100.0% 28.5%
3anwB00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 44.0 3.42e-01 93.2% 56.8%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4983663 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.88 60.0 5.69e-01 70.3% 63.1%
5055477 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.87 64.0 6.23e-01 75.7% 70.0%
5072045 604.10.1.0 alpha bundles › Spectrin repeat-like › Enzyme IIa from lactose specific PTS, IIa-lac › Enzyme IIa from lactose specific PTS, IIa-lac 0.87 65.0 5.62e-01 93.2% 54.3%
5043119 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.85 64.0 6.62e-01 100.0% 82.9%
3258488 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.84 59.0 5.28e-01 73.0% 60.0%
3458224 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.84 62.0 5.33e-01 77.0% 56.4%
3712573 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.83 61.0 4.85e-01 77.0% 43.6%
4937380 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.82 56.0 5.61e-01 73.0% 69.3%
4361189 610.4.1.1 alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY 0.81 70.0 5.26e-01 100.0% 40.6%
3741398 632.1.1.8 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › SOG2 0.81 58.0 4.77e-01 75.7% 43.1%
7793 5094.1.1.1 a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › OmpH 0.79 56.0 4.46e-01 74.3% 39.2%
3297770 622.4.1.26 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › HisKA 0.79 57.0 5.44e-01 75.7% 69.4%
3709926 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.77 59.0 5.15e-01 100.0% 56.2%
3225374 601.1.2.6 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Talin_IBS2B 0.77 66.0 5.56e-01 100.0% 56.7%
3301242 605.4.1.3 alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › DUF2499 0.77 53.0 4.85e-01 73.0% 55.8%
3370743 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.77 55.0 5.40e-01 75.7% 71.2%
4432932 3615.1.1.10 alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › TMEM125 0.75 67.0 5.48e-01 100.0% 85.9%
5025670 4070.1.1.0 alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like 0.74 68.0 5.03e-01 100.0% 59.4%
3609994 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.74 65.0 5.00e-01 100.0% 44.4%
3176663 603.1.1.207 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF30350 0.73 63.0 5.14e-01 93.2% 90.0%
4942740 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.72 65.0 5.45e-01 100.0% 60.0%
4014082 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.72 57.0 4.98e-01 100.0% 57.3%
5052411 604.5.1.0 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.72 62.0 5.62e-01 100.0% 71.0%
3257510 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.72 56.0 4.53e-01 100.0% 43.4%
4683246 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.72 49.0 3.63e-01 71.6% 30.0%
3279209 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.71 65.0 4.81e-01 100.0% 41.7%
3287376 101.1.2.49 alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C 0.71 59.0 4.49e-01 100.0% 38.9%
5045530 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.71 59.0 5.48e-01 100.0% 73.3%
4968714 7516.1.1.51 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_21 0.70 48.0 2.99e-01 83.8% 13.2%
5038235 159.1.1.4 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › PRA-PH 0.70 49.0 4.43e-01 100.0% 54.0%
3265926 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 62.0 4.17e-01 97.3% 42.6%
3584048 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.70 53.0 4.98e-01 100.0% 66.7%
3903860 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.69 63.0 5.00e-01 100.0% 58.6%
4883406 622.4.1.1 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › Blo-t-5 0.69 62.0 5.33e-01 100.0% 66.4%
4935676 604.5.1.2 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.68 58.0 5.06e-01 100.0% 63.6%
3695102 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 60.0 3.68e-01 100.0% 21.6%
4025148 4163.1.1.0 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like 0.67 61.0 4.97e-01 100.0% 61.5%
4628458 604.1.1.226 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF26877 0.67 56.0 5.37e-01 100.0% 81.2%
3377749 3843.1.1.15 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › ETR1_N 0.67 50.0 4.58e-01 90.5% 60.0%
4988222 4044.1.1.0 alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins 0.66 45.0 4.41e-01 70.3% 68.8%
3598208 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 53.0 3.25e-01 100.0% 14.3%
4663376 3593.1.1.1 a+b complex topology › Oncogenic effector CagA meander beta sheet domain › Oncogenic effector CagA meander beta sheet domain › Oncogenic effector CagA meander beta sheet domain › CagA_N 0.65 49.0 3.09e-01 81.1% 42.6%
1344564 601.4.1.6 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › TorS_sensor_domain 0.64 50.0 4.82e-01 100.0% 75.0%
3528863 604.6.1.1 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT 0.63 52.0 4.48e-01 100.0% 58.3%
4944333 633.10.1.0 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.62 55.0 4.67e-01 100.0% 92.8%
4626953 604.5.1.3 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › ArAE_1_C 0.62 51.0 4.84e-01 100.0% 75.6%
4579424 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.62 47.0 3.35e-01 83.8% 26.7%
3761553 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 53.0 3.48e-01 91.9% 31.8%
5069340 4163.1.1.1 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.61 51.0 4.32e-01 100.0% 55.8%
3703064 4163.1.1.1 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.59 52.0 4.26e-01 100.0% 53.6%
3275755 109.4.1.435 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RICTOR_N 0.59 51.0 4.16e-01 95.9% 84.3%
3693645 7015.1.1.0 alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.59 51.0 4.15e-01 100.0% 74.0%
3384541 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.59 52.0 4.13e-01 100.0% 71.6%
3216945 101.1.1.102 alpha arrays › HTH › HTH › Three-helical HTH › Lin-8 0.58 46.0 3.91e-01 86.5% 73.2%
4034454 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.57 47.0 4.02e-01 100.0% 55.2%