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ON014754.1__UQS94893.1__Pam2_13__00013

Bact-Vir

ON014754.1__UQS94893.1__Pam2_13__00013

Identity

Accession:
ON014754 ↗
Kingdom:
phage

Quality

96.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudanabaena_phage_Pam2

TaxID: 2936518

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-66
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 63.0 6.17e-01 100.0% 82.9%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 59.0 6.03e-01 100.0% 96.7%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 59.0 5.79e-01 100.0% 83.8%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 52.0 5.33e-01 100.0% 85.2%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.68 43.0 4.48e-01 100.0% 69.5%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 49.0 4.85e-01 100.0% 75.7%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 54.0 5.43e-01 100.0% 92.3%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 51.0 5.14e-01 100.0% 87.5%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.63 37.0 3.61e-01 95.3% 52.2%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 48.0 4.86e-01 100.0% 85.5%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 47.0 4.82e-01 100.0% 88.3%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 52.0 4.21e-01 98.4% 67.9%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 51.0 4.89e-01 100.0% 78.7%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 39.0 4.10e-01 98.4% 83.9%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 47.0 4.29e-01 98.4% 86.4%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 47.0 3.78e-01 100.0% 56.9%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.55 47.0 3.76e-01 100.0% 76.8%
4qq1C03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.54 43.0 3.97e-01 90.6% 87.5%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 3.97e-01 96.9% 87.6%
2jemA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.52 37.0 2.61e-01 76.6% 38.4%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.60e-01 98.4% 78.3%
2elbA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.75e-01 100.0% 79.4%
4harA00 3.10.50.50 Alpha Beta › Roll › Chitinase A; domain 3 › Rubella virus capsid protein 0.51 41.0 3.65e-01 92.2% 94.9%
4i79A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 37.0 2.49e-01 81.2% 96.8%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4196229 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.75 62.0 6.04e-01 100.0% 82.9%
3840076 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.75 62.0 6.35e-01 100.0% 96.7%
4550532 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.74 61.0 5.48e-01 100.0% 65.6%
4520767 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.73 60.0 5.89e-01 100.0% 82.9%
4995694 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 48.0 5.09e-01 100.0% 81.8%
3165077 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.69 57.0 5.57e-01 100.0% 84.3%
5028370 2006.1.6.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA 0.68 38.0 2.57e-01 98.4% 15.3%
3022801 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.64 51.0 4.64e-01 100.0% 64.4%
3482677 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 50.0 4.86e-01 100.0% 78.6%
3924038 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.63e-01 100.0% 77.3%
4446499 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.59 41.0 3.83e-01 82.8% 58.7%
3890948 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.59 41.0 2.48e-01 73.4% 65.0%
4678264 331.1.1.6 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.58 40.0 3.81e-01 82.8% 60.0%
3926363 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 46.0 3.93e-01 98.4% 72.2%
3263180 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 47.0 4.00e-01 100.0% 71.8%
3414272 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.53 44.0 3.95e-01 98.4% 90.5%
3996624 5.1.5.164 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_IFT140_1st, Beta-prop_IFT140_2nd 0.52 39.0 2.44e-01 98.4% 13.9%
5051733 5.1.10.17 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › LVIVD 0.52 38.0 3.57e-01 95.3% 65.3%
3397066 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 40.0 2.53e-01 84.4% 88.7%
5028369 5.1.4.87 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LVIVD 0.50 39.0 2.55e-01 100.0% 20.0%
D2 medium residues 75-137_192-250
PDB
Domain cluster: rep: BML_08182015_6_5m_scaffold_7_prodigal-single.1__X__X__00070__D4-57_130-172
D3 medium residues 138-191
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wvuB02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.75 69.0 4.56e-01 100.0% 27.6%
2cjlA02 3.30.20.10 Alpha Beta › 2-Layer Sandwich › Endochitinase; domain 2 › Endochitinase, domain 2 0.75 69.0 6.61e-01 100.0% 88.5%
2z39A02 3.30.20.10 Alpha Beta › 2-Layer Sandwich › Endochitinase; domain 2 › Endochitinase, domain 2 0.72 64.0 6.22e-01 100.0% 88.1%
4ccgY00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 40.0 3.90e-01 90.7% 100.0%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3419141 235.1.1.2 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_19 0.91 63.0 4.63e-01 100.0% 30.7%
1147708 235.1.1.2 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_19 0.88 81.0 5.27e-01 100.0% 44.7%
3973873 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.87 81.0 5.25e-01 100.0% 27.3%
159294 235.1.1.2 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_19 0.75 69.0 4.50e-01 100.0% 25.8%
3647235 235.1.1.2 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_19 0.70 65.0 4.69e-01 100.0% 40.0%
3989349 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.55 39.0 3.03e-01 75.9% 62.1%
3965844 589.1.1.2 ↗ alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain › SurA_N_3 0.54 37.0 2.69e-01 92.6% 24.4%
3934619 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.54 30.0 3.40e-01 77.8% 77.1%