←Back to structures

ON014754.1__UQS95045.1__Pam2_165__00165

Bact-Vir

ON014754.1__UQS95045.1__Pam2_165__00165

Identity

Accession:
ON014754 ↗
Kingdom:
phage

Quality

93.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudanabaena_phage_Pam2

TaxID: 2936518

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-104_123-155
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 20.0 2.86e-01 78.8% 56.5%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 21.0 2.93e-01 78.8% 60.6%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 21.0 3.21e-01 73.0% 79.2%
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 38.0 4.11e-01 89.1% 92.1%
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.51 26.0 3.08e-01 96.4% 68.4%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3570399 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 21.0 2.96e-01 74.5% 63.1%
3926118 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.52 20.0 2.95e-01 81.8% 78.3%
D2 medium residues 105-122_156-196
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a73A00 3.90.75.10 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A 0.61 48.0 3.53e-01 86.4% 43.2%
2izvA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 44.0 3.26e-01 78.0% 60.1%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 41.0 4.10e-01 84.7% 67.7%
2zwaA02 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.60 47.0 3.02e-01 88.1% 92.0%
6fmeA03 2.20.220.10 Mainly Beta › Single Sheet › Glycosyl hydrolase fold › alpha-Amylases 0.59 44.0 4.36e-01 83.1% 75.8%
2vifA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 43.0 3.39e-01 78.0% 90.5%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.57 45.0 4.17e-01 86.4% 82.7%
2fokA03 3.40.91.30 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.57 43.0 3.17e-01 84.7% 96.0%
1r7lA00 3.30.2120.10 Alpha Beta › 2-Layer Sandwich › Bacillus phage protein › Bacillus phage protein-like 0.57 46.0 3.81e-01 88.1% 53.4%
3fbxA00 3.60.60.30 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › 0.57 50.0 2.93e-01 100.0% 22.1%
2xn1A01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.57 47.0 2.94e-01 91.5% 39.0%
2yfoA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.56 48.0 3.01e-01 94.9% 62.0%
2ky6A00 2.40.290.30 Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › Mediator complex subunit 25, ACID domain 0.55 45.0 3.29e-01 91.5% 52.4%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.55 43.0 4.48e-01 86.4% 100.0%
3gywA02 3.30.1120.90 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Nucleosome assembly protein 0.55 42.0 3.32e-01 83.1% 57.6%
2ezvA01 3.40.600.40 Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › Type II restriction enzyme SfiI, multifunctional domain 0.52 39.0 2.73e-01 86.4% 24.4%
2p0wA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 43.0 3.36e-01 93.2% 66.2%
6j4nC01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 40.0 2.52e-01 84.7% 55.7%
2e9wB05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.18e-01 76.3% 92.3%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3297981 252.1.1.1 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.63 50.0 5.19e-01 100.0% 94.5%
3730430 5.1.3.23 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.62 43.0 2.59e-01 86.4% 10.5%
4963007 2008.1.1.16 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.61 44.0 3.31e-01 76.3% 74.2%
4025727 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.60 46.0 3.59e-01 86.4% 86.4%
3978756 3197.1.1.1 ↗ a+b two layers › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › PipB2_N 0.59 43.0 3.41e-01 86.4% 38.3%
3595178 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.57 47.0 2.67e-01 91.5% 16.8%
4774106 210.1.2.6 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Phospholip_B 0.57 50.0 3.12e-01 100.0% 33.7%
3199418 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.57 38.0 4.18e-01 81.4% 88.9%
5023640 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.54 43.0 3.93e-01 96.6% 65.8%
4969887 206.1.2.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › SAICAR_synt 0.54 39.0 2.62e-01 79.7% 82.8%
3290097 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 43.0 3.85e-01 100.0% 71.6%
4017539 219.1.1.112 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 0.52 40.0 2.62e-01 93.2% 82.6%