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ON014755.1__UQS95142.1__Pam3_71__00071

Bact-Vir

ON014755.1__UQS95142.1__Pam3_71__00071

Identity

Accession:
ON014755 ↗
Kingdom:
phage

Quality

78.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-99
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8fbnB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.77 54.0 4.06e-01 72.9% 58.6%
2jbwA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.75 52.0 5.05e-01 70.8% 71.8%
3anwA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 52.0 4.89e-01 71.9% 99.1%
2pihA00 1.20.1500.10 Mainly Alpha › Up-down Bundle › YheA-like fold › YheA/YmcA-like 0.68 54.0 5.00e-01 87.5% 67.5%
3craB01 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.67 47.0 5.01e-01 72.9% 86.0%
6xj1A01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.56 45.0 3.30e-01 84.4% 43.7%
7p3rA01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.53 42.0 2.90e-01 84.4% 91.4%
2v0oB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.50 46.0 3.28e-01 100.0% 88.6%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3245201 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.75 55.0 4.75e-01 75.0% 62.1%
4025145 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.75 52.0 4.83e-01 71.9% 71.7%
3589063 4336.1.1.1 alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.71 57.0 5.33e-01 87.5% 70.8%
5035734 159.1.1.1 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG 0.71 52.0 4.67e-01 75.0% 85.6%
3215082 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.70 40.0 3.59e-01 100.0% 40.0%
4401479 4006.1.1.1 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.70 47.0 4.70e-01 70.8% 66.0%
3784728 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 55.0 3.89e-01 86.5% 58.9%
3957736 4006.1.1.1 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.67 45.0 4.50e-01 71.9% 66.0%
4403319 4006.1.1.1 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.66 45.0 4.37e-01 74.0% 63.8%
3837815 2004.1.1.433 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.64 50.0 3.05e-01 85.4% 21.7%
3569669 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.63 43.0 3.37e-01 100.0% 34.9%
4489484 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.61 47.0 3.09e-01 82.3% 87.7%
5075803 3291.1.1.1 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.61 49.0 4.30e-01 83.3% 90.4%
4086322 5086.1.1.205 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › PF30209 0.61 41.0 3.42e-01 84.4% 40.6%
3677594 3291.1.1.110 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › DUF641 0.60 50.0 4.40e-01 89.6% 78.6%
5031890 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.55 45.0 3.47e-01 100.0% 37.1%
D2 medium residues 129-179
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5umbA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 50.0 3.49e-01 90.2% 71.8%
2qenA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 40.0 3.64e-01 76.5% 47.1%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 36.0 3.01e-01 92.2% 30.0%
1yg2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 41.0 3.61e-01 76.5% 45.6%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 39.0 3.48e-01 84.3% 43.4%
4iggB06 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.59 45.0 3.08e-01 88.2% 43.7%
2ziuA02 1.10.150.670 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Crossover junction endonuclease EME1, DNA-binding domain 0.59 43.0 3.79e-01 88.2% 49.4%
1in4A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 36.0 3.26e-01 78.4% 43.8%
1biqA00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.57 47.0 2.91e-01 100.0% 21.5%
1d8jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 3.79e-01 90.2% 54.3%
3k4oA00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.56 47.0 3.03e-01 98.0% 71.2%
5f1cA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.56 43.0 4.25e-01 94.1% 83.1%
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 37.0 3.09e-01 72.5% 43.6%
2yzsA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.55 42.0 2.86e-01 90.2% 20.6%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 39.0 3.29e-01 82.4% 63.2%
4q5nA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 43.0 3.42e-01 90.2% 41.1%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 44.0 3.45e-01 100.0% 86.0%
5hvqC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 36.0 3.08e-01 80.4% 36.7%
2xcqA02 3.90.199.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase II; domain 5 › Topoisomerase II, domain 5 0.53 44.0 2.85e-01 96.1% 40.6%
8dgfB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 43.0 3.06e-01 100.0% 87.4%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 3.14e-01 88.2% 43.4%
3gv5B01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.53 42.0 3.30e-01 98.0% 67.4%
4ofzA01 1.20.58.1800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 42.0 3.42e-01 98.0% 56.6%
3o8oF01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 35.0 2.43e-01 72.5% 53.8%
5d0yA00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.52 41.0 3.09e-01 98.0% 40.6%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 3.25e-01 100.0% 83.4%
6h9dA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.51 42.0 3.18e-01 100.0% 66.2%
4ev0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 34.0 3.13e-01 88.2% 46.8%
4gdhA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.51 38.0 2.74e-01 88.2% 86.3%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 38.0 3.25e-01 86.3% 92.6%
1yaxB00 3.30.450.140 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PhoQ sensor domain 0.51 40.0 3.07e-01 92.2% 96.3%
3uh0A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 40.0 2.59e-01 96.1% 49.3%
3e97A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 3.21e-01 78.4% 52.6%
1gkuB06 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.50 41.0 3.06e-01 100.0% 43.6%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 35.0 3.09e-01 94.1% 46.4%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3787527 142.3.1.1 alpha complex topology › Sigma2 domain-like › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Sld7_C 0.63 50.0 4.35e-01 92.2% 64.7%
4988663 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.63 42.0 3.62e-01 70.6% 74.1%
3693567 5041.1.1.0 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.62 51.0 4.32e-01 94.1% 58.9%
4939717 3758.2.1.1 alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB › MotA_ExbB 0.62 46.0 3.21e-01 84.3% 27.5%
4219640 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 53.0 3.06e-01 100.0% 49.1%
3996353 1075.4.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.60 49.0 2.77e-01 100.0% 6.8%
4028685 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.60 44.0 3.54e-01 82.4% 60.9%
4989007 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.60 49.0 3.62e-01 96.1% 46.9%
3675304 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.59 41.0 3.24e-01 76.5% 61.7%
3916907 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.59 46.0 2.99e-01 94.1% 23.5%
3260046 102.1.1.41 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › EME1-MUS81_C 0.59 43.0 3.57e-01 88.2% 42.0%
4181293 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.58 42.0 3.42e-01 82.4% 60.9%
4948599 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 42.0 3.67e-01 84.3% 85.6%
4535565 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.58 39.0 3.17e-01 74.5% 36.0%
3339900 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.57 36.0 2.72e-01 80.4% 23.6%
5032505 101.1.2.210 alpha arrays › HTH › HTH › winged helix domain › CggR_N 0.56 37.0 3.21e-01 72.5% 41.1%
3213629 2002.1.1.111 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.55 43.0 2.66e-01 88.2% 98.8%
5035853 101.1.2.222 alpha arrays › HTH › HTH › winged helix domain › PH0730-like_N 0.55 38.0 3.24e-01 98.0% 40.0%
3972450 4033.1.1.1 alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N 0.55 43.0 3.20e-01 92.2% 52.7%
5011494 7565.1.1.1 a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase 0.54 40.0 2.73e-01 82.4% 21.9%
4627782 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 36.0 3.09e-01 70.6% 72.9%
4185879 101.1.2.210 alpha arrays › HTH › HTH › winged helix domain › CggR_N 0.54 37.0 3.22e-01 80.4% 44.7%
3690513 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.53 41.0 3.18e-01 90.2% 90.2%
3978531 223.1.1.58 a+b three layers › Profilin-like › sensor domains › sensor domains › 2CSK_N 0.53 41.0 3.09e-01 94.1% 80.6%
4858145 2002.1.1.111 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.53 35.0 2.30e-01 70.6% 30.8%
3187789 2002.1.1.111 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.53 35.0 2.20e-01 70.6% 11.0%
3781291 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.52 40.0 3.38e-01 90.2% 94.0%
4025655 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.52 41.0 3.46e-01 90.2% 66.3%
2390768 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 38.0 3.18e-01 80.4% 95.7%
3329492 170.2.1.0 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.51 36.0 3.04e-01 80.4% 44.8%
4928315 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.51 41.0 3.62e-01 88.2% 64.0%
3581477 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 38.0 3.96e-01 84.3% 100.0%
4984764 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 33.0 2.35e-01 86.3% 17.4%
5028061 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.51 40.0 3.37e-01 88.2% 51.1%
4972271 327.17.1.2 a+b two layers › Alpha-lytic protease prodomain-like › S-adenosylmethionine synthetase › S-adenosylmethionine synthetase › AdoMet_Synthase 0.51 41.0 2.53e-01 100.0% 49.7%
3937187 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.50 35.0 2.91e-01 78.4% 100.0%
4381440 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.50 37.0 3.08e-01 90.2% 66.1%
4224821 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.50 39.0 3.11e-01 90.2% 89.6%
5036014 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.50 39.0 3.30e-01 92.2% 92.6%