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ON014756.1__UQS95153.1__Pam4_10__00010

Bact-Vir

ON014756.1__UQS95153.1__Pam4_10__00010

Identity

Accession:
ON014756 ↗
Kingdom:
phage

Quality

90.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 17-90_216-259
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3g6sA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.79 70.0 5.26e-01 94.1% 99.6%
4fpvB00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.78 69.0 5.19e-01 93.2% 96.9%
1vybA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.74 64.0 5.01e-01 92.4% 98.7%
6lpmA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.73 65.0 4.99e-01 94.1% 100.0%
1akoA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.72 63.0 4.71e-01 91.5% 100.0%
2imqX00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.70 61.0 4.58e-01 93.2% 99.3%
2ei9A00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.70 62.0 4.94e-01 93.2% 100.0%
3n9vB00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.69 61.0 4.54e-01 95.8% 99.3%
4a9cA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.69 60.0 4.50e-01 94.9% 100.0%
1i9zA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.68 61.0 4.33e-01 96.6% 86.3%
5h8iI00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.60 52.0 3.93e-01 96.6% 88.7%
1emsA01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.58 51.0 3.94e-01 96.6% 90.4%
1v8dC00 3.40.50.10360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Hypothetical protein TT1679 0.57 45.0 3.84e-01 82.2% 88.3%
1rf6A01 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.56 46.0 3.84e-01 90.7% 96.8%
1q36A01 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.55 46.0 3.87e-01 91.5% 95.6%
1kbpA02 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.53 44.0 3.27e-01 89.8% 95.2%
1t70A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.52 45.0 3.59e-01 97.5% 95.3%
2xswB00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.52 46.0 3.41e-01 100.0% 88.0%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4575187 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.75 63.0 4.86e-01 90.7% 100.0%
4867356 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.73 64.0 4.99e-01 92.4% 99.1%
4872964 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.73 64.0 5.00e-01 92.4% 100.0%
3584172 246.3.1.0 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like 0.73 64.0 4.90e-01 93.2% 94.9%
3668547 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.73 64.0 4.92e-01 92.4% 97.1%
3335367 246.3.1.0 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like 0.73 65.0 5.15e-01 95.8% 98.3%
3766919 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.72 64.0 3.91e-01 94.9% 33.7%
3878047 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.72 63.0 4.79e-01 91.5% 94.8%
3228266 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.72 65.0 5.08e-01 96.6% 97.5%
3264539 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.72 65.0 5.12e-01 95.8% 96.5%
3877667 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.72 64.0 4.99e-01 94.9% 99.2%
3753580 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.72 64.0 4.99e-01 94.9% 97.5%
3675211 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.72 63.0 4.92e-01 92.4% 99.6%
5076758 328.9.1.0 a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain 0.72 45.0 5.60e-01 94.9% 100.0%
3270997 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.72 64.0 4.58e-01 94.9% 99.4%
4404035 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.71 66.0 5.20e-01 99.2% 97.8%
3878644 246.3.1.3 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos_2 0.71 64.0 5.13e-01 96.6% 100.0%
3913784 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.71 63.0 4.81e-01 94.9% 94.9%
4340168 246.3.1.3 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos_2 0.71 63.0 4.96e-01 94.9% 99.1%
3884315 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.71 65.0 4.05e-01 100.0% 42.0%
3915025 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.70 64.0 3.89e-01 97.5% 35.1%
4524063 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.70 64.0 3.98e-01 98.3% 39.4%
3703066 246.3.1.0 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like 0.70 62.0 4.92e-01 93.2% 98.2%
3250484 246.3.1.0 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like 0.70 60.0 4.80e-01 91.5% 100.0%
4403780 246.3.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.70 65.0 5.07e-01 99.2% 97.0%
3237967 246.3.1.4 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 0.70 62.0 4.45e-01 95.8% 91.7%
3713241 246.3.1.4 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 0.69 62.0 4.60e-01 95.8% 100.0%
None 0.69 64.0 3.97e-01 100.0% 41.6%
3874027 246.3.1.4 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 0.69 63.0 4.53e-01 98.3% 99.1%
3596776 246.3.1.0 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like 0.69 61.0 4.65e-01 96.6% 97.0%
3532047 246.3.1.0 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like 0.68 61.0 4.05e-01 96.6% 66.4%
3626835 246.3.1.4 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 0.68 61.0 4.41e-01 95.8% 95.2%
2409716 246.3.1.3 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos_2 0.68 62.0 4.95e-01 96.6% 98.2%
None 0.68 52.0 4.02e-01 79.7% 90.4%
3305972 328.1.1.6 a+b two layers › IF3-like › AlbA-like › AlbA-like › PF26055 0.67 45.0 5.06e-01 98.3% 88.9%
3361891 246.3.1.4 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 0.66 59.0 4.29e-01 98.3% 97.5%
5042985 2003.1.5.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.65 49.0 3.82e-01 78.8% 89.4%
4946282 2003.1.5.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.58 51.0 3.93e-01 95.8% 91.9%
4078242 3008.1.1.0 a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.55 33.0 3.62e-01 91.5% 71.0%
3741383 246.2.1.0 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases 0.54 47.0 3.64e-01 94.9% 92.8%
4991219 2004.1.3.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.53 38.0 3.11e-01 72.9% 87.6%
4512955 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.53 45.0 3.42e-01 93.2% 86.8%
3261315 246.2.1.3 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos,Metallophos_C 0.51 44.0 3.27e-01 94.1% 84.2%
D2 medium residues 91-169
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tebB00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.69 53.0 3.63e-01 86.1% 24.6%
4fvaC00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.67 52.0 3.67e-01 86.1% 26.7%
1dfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 42.0 3.33e-01 83.5% 32.9%
2g3aA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 43.0 4.01e-01 84.8% 58.1%
2joiA00 3.30.310.190 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.59 46.0 4.34e-01 83.5% 76.0%
2m89A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 46.0 3.94e-01 89.9% 91.0%
3f02B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 40.0 3.71e-01 81.0% 59.0%
1f06A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 40.0 3.44e-01 82.3% 59.4%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 33.0 3.18e-01 79.7% 54.9%
2yk0A03 1.20.58.1930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 43.0 3.27e-01 98.7% 79.7%
3qldA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 41.0 3.34e-01 87.3% 83.6%
1sjdB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 37.0 3.16e-01 75.9% 89.3%
7xoiD01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 43.0 3.94e-01 100.0% 69.2%
2rqlA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.51 35.0 3.37e-01 84.8% 58.9%
1imuA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.51 40.0 3.65e-01 84.8% 86.0%
3cskA02 3.30.540.30 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › 0.51 36.0 2.93e-01 74.7% 62.3%
2chrA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 41.0 3.50e-01 87.3% 93.7%
4f0qA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.51 37.0 2.80e-01 77.2% 73.4%
3topA05 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 45.0 3.76e-01 100.0% 67.6%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4986732 331.16.1.1 a+b two layers › TBP-like › TA0095-like › TA0095-like › DUF5611 0.68 45.0 4.74e-01 84.8% 77.1%
3630197 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.65 47.0 3.36e-01 82.3% 24.9%
3928653 247.1.1.0 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.61 43.0 3.32e-01 82.3% 32.8%
3566614 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 41.0 3.55e-01 79.7% 46.4%
4974213 2484.1.1.77 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C 0.57 42.0 3.19e-01 78.5% 100.0%
4314504 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 42.0 3.57e-01 82.3% 93.3%
5035440 244.2.1.1 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Pyr_redox_dim 0.55 44.0 3.79e-01 91.1% 74.8%
5052406 868.1.1.1 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.53 37.0 2.91e-01 77.2% 32.2%
395616 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.53 41.0 3.61e-01 83.5% 93.3%
2723969 231.1.4.1 a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Apc (acetophenone carboxylase) beta subunit middle domain › Hydantoinase_B 0.53 45.0 3.78e-01 98.7% 53.5%
3365075 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.52 41.0 2.94e-01 86.1% 42.0%
3984933 252.2.1.5 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 0.52 36.0 3.45e-01 70.9% 85.6%
163996 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.51 40.0 3.43e-01 86.1% 94.5%
5074619 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.51 40.0 3.48e-01 86.1% 97.5%
4945201 218.1.1.11 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_C 0.50 39.0 3.47e-01 86.1% 99.2%
3968621 10.32.1.280 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF3999 0.50 35.0 3.16e-01 75.9% 54.2%
4987228 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.50 39.0 3.17e-01 89.9% 41.4%