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ON014756.1__UQS95171.1__Pam4_28__00028

Bact-Vir

ON014756.1__UQS95171.1__Pam4_28__00028

Identity

Accession:
ON014756 ↗
Kingdom:
phage

Quality

77.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-102
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04883.18 best HK97-gp10_like 29.6 1.50e-06 59.6% 75.6%
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6ofsA04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.72 58.0 4.74e-01 100.0% 47.3%
4wxaA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.71 48.0 5.13e-01 100.0% 82.1%
3ofgB00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.70 50.0 5.26e-01 100.0% 82.8%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.68 42.0 4.27e-01 93.9% 63.2%
2kl8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.68 42.0 4.51e-01 100.0% 71.8%
4bbyA05 3.30.300.330 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.68 54.0 5.23e-01 100.0% 76.9%
2b4vA03 3.30.70.1970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 44.0 4.43e-01 98.0% 65.7%
2g47A04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.67 51.0 3.89e-01 100.0% 33.8%
3hr6A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 46.0 4.00e-01 100.0% 45.2%
3hz7A00 3.30.110.40 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain 0.67 33.0 3.76e-01 76.8% 61.6%
4ctaA02 3.30.70.2860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 42.0 4.65e-01 100.0% 82.7%
2cveA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 39.0 4.50e-01 100.0% 84.8%
2mq8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.66 48.0 4.70e-01 100.0% 69.6%
3rrkA03 3.30.70.2750 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 41.0 4.54e-01 98.0% 82.4%
4za1C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 45.0 4.70e-01 100.0% 77.2%
5axgA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.64 39.0 3.62e-01 99.0% 47.6%
3fgvA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 45.0 4.70e-01 100.0% 79.6%
3rjaA02 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.63 43.0 3.35e-01 98.0% 30.6%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.63 36.0 4.04e-01 88.9% 73.3%
1lq9A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 47.0 4.57e-01 100.0% 71.4%
2if1A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.63 38.0 3.50e-01 94.9% 46.8%
1tuwA00 3.30.70.1090 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel. 0.62 46.0 4.52e-01 100.0% 72.6%
6ef7A00 2.60.40.4140 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 44.0 4.10e-01 100.0% 60.5%
1sb7A01 3.30.2350.20 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › TruD, catalytic domain 0.60 42.0 3.34e-01 100.0% 35.5%
2anrA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.60 39.0 4.33e-01 100.0% 86.7%
3n89A02 3.30.310.210 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.60 39.0 3.55e-01 100.0% 47.4%
2grvA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.60 44.0 4.24e-01 100.0% 68.1%
1zhvA00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.60 37.0 3.37e-01 94.9% 45.5%
4c8yA01 3.30.70.1890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 45.0 4.44e-01 100.0% 76.2%
2cryA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 42.0 4.23e-01 100.0% 72.5%
2lrrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.58 29.0 3.34e-01 73.7% 62.9%
1x8dA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 42.0 4.30e-01 100.0% 79.4%
2q14A02 1.20.1250.30 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.58 38.0 3.17e-01 92.9% 39.8%
4bxiA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.58 42.0 3.75e-01 82.8% 52.1%
3go9A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.57 51.0 3.98e-01 100.0% 75.1%
2cxiA01 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.57 38.0 4.18e-01 100.0% 86.1%
2g47A03 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.57 51.0 3.92e-01 100.0% 63.0%
2xrnA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.57 46.0 3.79e-01 86.9% 97.7%
4r3aA02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.56 45.0 4.04e-01 86.9% 76.1%
3l1aA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.56 50.0 3.94e-01 100.0% 53.2%
2yh6D00 3.30.530.50 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.56 50.0 4.88e-01 100.0% 94.5%
8begA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 43.0 3.72e-01 100.0% 51.9%
1vs3A02 3.30.70.660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.55 50.0 4.42e-01 100.0% 70.1%
1u2hA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 36.0 3.66e-01 100.0% 67.7%
1wjwA01 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.55 42.0 4.49e-01 100.0% 96.5%
3cx5A01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.55 49.0 3.90e-01 100.0% 71.3%
2d5wA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.54 40.0 3.81e-01 100.0% 65.8%
6lynD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 34.0 3.57e-01 100.0% 70.1%
4bsjA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 4.06e-01 100.0% 69.9%
3oh8A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 47.0 4.26e-01 100.0% 92.1%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 28.0 3.15e-01 72.7% 66.2%
4q0cA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 37.0 3.18e-01 72.7% 70.3%
4nofB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.97e-01 100.0% 78.3%
2pmbA01 3.30.1850.10 Alpha Beta › 2-Layer Sandwich › MCP/YpsA-like › MoCo carrier protein-like 0.51 43.0 4.21e-01 100.0% 88.8%
1qexA03 2.60.40.1680 Mainly Beta › Sandwich › Immunoglobulin-like › 4-oxalocrotonate tautomerase-like 0.51 43.0 4.17e-01 100.0% 82.5%
7qssA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.50 41.0 3.31e-01 100.0% 46.3%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4416593 304.28.1.4 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD_1st 0.76 56.0 5.89e-01 100.0% 84.4%
3165390 304.24.1.36 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › SPOR 0.74 46.0 5.02e-01 100.0% 76.2%
3936869 304.8.1.72 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › SCVP 0.74 55.0 5.55e-01 100.0% 78.8%
5029644 304.39.1.1 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.72 54.0 5.30e-01 100.0% 74.3%
3591115 304.163.1.0 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.72 55.0 5.48e-01 100.0% 80.0%
2834102 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.71 51.0 5.43e-01 100.0% 86.0%
4984986 304.162.1.2 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › FLAD1_M 0.70 43.0 5.14e-01 97.0% 93.8%
1513105 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.70 48.0 5.14e-01 100.0% 84.1%
3227268 309.1.1.23 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C, Peptidase_M16_M, PqqF-like_C_4 0.70 53.0 3.50e-01 100.0% 19.1%
3865044 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.69 45.0 4.72e-01 100.0% 73.9%
5013852 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.69 49.0 5.26e-01 100.0% 87.1%
5028837 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.68 44.0 5.04e-01 98.0% 91.4%
4991852 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.68 44.0 4.79e-01 100.0% 80.0%
3389472 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.68 46.0 5.02e-01 100.0% 86.3%
3742389 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.68 44.0 4.80e-01 100.0% 81.2%
4927268 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.68 46.0 4.98e-01 100.0% 85.0%
4995243 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.68 45.0 5.02e-01 100.0% 89.3%
3313948 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.68 46.0 4.99e-01 100.0% 86.3%
5047612 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.68 46.0 5.16e-01 100.0% 93.3%
1168392 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.67 46.0 3.95e-01 100.0% 43.8%
3488179 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.67 47.0 4.94e-01 100.0% 81.1%
4967547 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.67 45.0 4.90e-01 100.0% 85.0%
4104229 304.7.1.2 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 0.66 47.0 4.78e-01 100.0% 74.0%
3552384 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.66 43.0 4.54e-01 100.0% 73.9%
4945658 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.66 45.0 4.88e-01 100.0% 84.3%
5034013 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.66 35.0 3.92e-01 73.7% 66.7%
5030527 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.65 45.0 4.87e-01 100.0% 87.5%
1320691 312.1.1.12 a+b three layers › HIT-like › HIT-related › HIT-related › DUF4931_C 0.64 52.0 4.89e-01 100.0% 71.9%
4498936 309.1.1.0 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase 0.64 58.0 4.59e-01 100.0% 79.0%
4985494 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.64 57.0 3.68e-01 100.0% 53.1%
3280191 304.4.1.7 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Cyclase_polyket 0.63 47.0 4.67e-01 100.0% 74.3%
3934872 3122.1.1.2 a+b complex topology › MESD › MESD › MESD › SCVP 0.62 47.0 4.71e-01 100.0% 78.1%
5080869 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.62 45.0 4.82e-01 100.0% 89.4%
3603739 101.1.1.498 alpha arrays › HTH › HTH › Three-helical HTH › LAGLIDADG_3 0.62 49.0 3.36e-01 85.9% 25.5%
4440185 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.60 44.0 4.70e-01 100.0% 89.4%
3394262 304.47.1.1 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.60 53.0 4.96e-01 100.0% 79.7%
3423974 309.1.1.1 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16 0.59 54.0 4.11e-01 100.0% 65.7%
5052583 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 43.0 4.28e-01 100.0% 74.3%
3526003 304.9.1.87 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF30891 0.58 49.0 4.71e-01 100.0% 81.7%
3971910 5069.1.1.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.57 40.0 2.87e-01 71.7% 49.0%
4355727 304.9.1.71 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › SNU71_RBD 0.57 51.0 4.57e-01 100.0% 87.1%
None 0.57 52.0 3.69e-01 100.0% 35.4%
3512763 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 44.0 4.19e-01 100.0% 71.3%
3269411 309.1.1.8 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_M 0.56 49.0 3.78e-01 100.0% 59.6%
3598758 304.20.1.0 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain 0.55 50.0 4.21e-01 100.0% 91.5%
3997117 11.1.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.55 41.0 4.02e-01 100.0% 71.8%
5048761 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 30.0 3.49e-01 74.7% 75.7%
3240839 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.54 39.0 2.77e-01 76.8% 85.5%
5018517 328.8.1.1 a+b two layers › IF3-like › Schlafen 8 › Schlafen 8 › SLFN_AlbA_2 0.54 44.0 3.80e-01 87.9% 60.6%
4983426 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 31.0 3.46e-01 85.9% 71.2%
3235660 304.151.1.4 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › PF25899 0.53 47.0 4.41e-01 100.0% 91.2%
5035779 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.53 47.0 4.43e-01 99.0% 92.5%
3386233 314.1.1.6 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB 0.52 46.0 3.89e-01 100.0% 60.0%
5008107 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.52 28.0 2.76e-01 71.7% 47.6%
4096826 3019.1.1.1 beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Flagellin_IN 0.52 44.0 4.32e-01 100.0% 83.6%
3288743 304.4.1.3 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII 0.52 45.0 4.29e-01 100.0% 84.3%
4959073 101.1.2.271 alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC 0.51 29.0 2.72e-01 74.7% 45.0%
3476902 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 40.0 3.54e-01 100.0% 58.6%