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ON014757.1__UQS95221.1__Pam5_05__00005

Bact-Vir

ON014757.1__UQS95221.1__Pam5_05__00005

Identity

Accession:
ON014757 ↗
Kingdom:
phage

Quality

86.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudanabaena_phage_Pam5

TaxID: 2936521

Cluster

View cluster (166 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 42-63_82-139_307-347
PDB
Domain cluster: rep: IMGVR_UViG_3300002120_000098-3300002120-C687J26616_100029157__D29-50_74-150_259-304
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ohgA01 3.30.2400.10 Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › Major capsid protein gp5 0.78 68.0 6.39e-01 93.4% 95.9%
2e0zA01 3.30.2400.20 Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › 0.77 51.0 5.44e-01 90.9% 76.6%
6urtA02 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 40.0 4.65e-01 82.6% 76.1%
4acvA00 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.69 43.0 4.41e-01 85.1% 63.9%
4bbyA05 3.30.300.330 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.69 44.0 4.66e-01 89.3% 72.2%
3pcoB06 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.68 39.0 4.35e-01 82.6% 71.3%
3nrbB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.68 33.0 3.87e-01 71.1% 65.1%
1jw3A00 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.68 39.0 3.72e-01 94.2% 48.6%
6i9gA01 3.30.2400.30 Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › 0.66 57.0 5.05e-01 92.6% 78.1%
4bfiB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 32.0 3.69e-01 84.3% 63.3%
3o4oB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 36.0 3.81e-01 70.2% 60.6%
3tupA02 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.64 38.0 4.14e-01 94.2% 71.9%
4i0kA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 33.0 3.70e-01 84.3% 63.2%
4r6uA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 33.0 3.52e-01 83.5% 57.3%
2l8yA00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.60 40.0 4.29e-01 92.6% 79.0%
6ue9L02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 34.0 3.45e-01 85.1% 54.9%
3d85D02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 33.0 3.51e-01 84.3% 60.4%
6ofsA04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.59 38.0 3.36e-01 83.5% 42.4%
3onrJ00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.59 34.0 4.16e-01 81.0% 97.1%
2raaA00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.58 30.0 2.65e-01 81.0% 32.0%
3r75B01 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.58 39.0 2.75e-01 82.6% 21.5%
1g84A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 33.0 3.50e-01 86.0% 63.8%
1ekrA00 3.30.70.640 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain 0.57 40.0 3.82e-01 71.9% 61.5%
2dchX02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.56 29.0 3.07e-01 87.6% 52.3%
2g5fB00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.52 37.0 2.55e-01 86.0% 20.2%
3amiA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.52 35.0 2.99e-01 85.1% 40.7%
4of8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.94e-01 77.7% 86.4%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4890673 2485.3.1.9 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.97 95.0 6.47e-01 100.0% 83.1%
2842229 2485.3.1.9 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.92 86.0 5.84e-01 96.7% 84.9%
2995325 2485.3.1.9 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.90 83.0 5.68e-01 96.7% 82.9%
4929755 2485.3.1.18 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.85 76.0 5.66e-01 94.2% 83.3%
5041371 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.84 75.0 5.38e-01 94.2% 90.6%
5081487 2485.3.1.10 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF5309 0.82 73.0 5.49e-01 95.0% 94.1%
3965498 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.82 73.0 5.18e-01 94.2% 87.3%
2989356 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.81 72.0 5.28e-01 94.2% 87.1%
3942344 2485.3.1.19 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › PF30928 0.81 72.0 5.24e-01 94.2% 84.5%
3075730 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.81 72.0 5.16e-01 95.0% 83.5%
2989289 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.81 73.0 5.25e-01 96.7% 85.1%
4241362 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.81 72.0 5.29e-01 95.0% 86.8%
3946670 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.80 71.0 5.35e-01 94.2% 82.5%
4988094 2485.3.1.18 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.78 70.0 5.34e-01 94.2% 85.9%
2989372 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.78 70.0 5.13e-01 95.9% 85.2%
2989506 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.78 70.0 5.15e-01 96.7% 90.2%
2546181 2485.3.1.13 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp13-like 0.77 69.0 4.99e-01 96.7% 84.5%
1877546 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.76 67.0 4.95e-01 94.2% 87.0%
3949155 2485.3.1.11 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like 0.76 68.0 5.15e-01 95.0% 86.0%
5083051 2485.3.1.12 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF6260 0.74 66.0 4.95e-01 96.7% 86.2%
2989340 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.72 64.0 4.70e-01 97.5% 84.8%
4031028 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.71 62.0 4.67e-01 94.2% 77.9%
3952452 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.70 62.0 4.63e-01 95.0% 83.6%
4941817 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.68 40.0 4.20e-01 71.1% 63.3%
3612888 304.31.1.0 ↗ a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase 0.68 43.0 4.40e-01 97.5% 65.0%
3921201 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 33.0 3.64e-01 83.5% 58.9%
3964886 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.65 48.0 4.58e-01 81.0% 66.4%
3586352 872.3.1.5 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 0.65 49.0 5.19e-01 93.4% 91.4%
3627282 872.3.1.0 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.64 48.0 5.23e-01 93.4% 96.0%
3595511 304.20.1.0 ↗ a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain 0.64 46.0 4.24e-01 97.5% 58.1%
5017844 304.39.1.0 ↗ a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.62 41.0 4.13e-01 79.3% 66.7%
3247018 872.3.1.0 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.62 46.0 4.83e-01 92.6% 86.4%
4342449 305.1.1.1 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.62 39.0 3.94e-01 86.8% 63.3%
3705145 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.61 50.0 4.38e-01 87.6% 94.4%
3513756 872.3.1.5 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 0.60 44.0 4.88e-01 92.6% 97.9%
3391269 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.60 38.0 3.88e-01 71.1% 66.1%
3164250 880.1.1.1 ↗ a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.58 39.0 2.89e-01 82.6% 25.9%
3621732 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.58 38.0 4.09e-01 82.6% 78.1%
3931456 304.42.1.1 ↗ a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC › MoaC 0.57 40.0 3.66e-01 72.7% 52.4%
3482572 872.3.1.0 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.57 45.0 4.73e-01 93.4% 96.2%
1758364 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.57 34.0 3.57e-01 85.1% 64.8%
3496203 872.3.1.0 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.57 42.0 4.57e-01 92.6% 96.0%
4057787 872.3.1.1 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 0.57 46.0 4.86e-01 92.6% 100.0%
5054179 304.42.1.1 ↗ a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC › MoaC 0.56 39.0 3.74e-01 73.6% 60.0%
5029745 304.133.1.1 ↗ a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.56 37.0 4.38e-01 89.3% 100.0%
4082913 304.42.1.1 ↗ a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC › MoaC 0.56 39.0 3.64e-01 72.7% 55.6%
5055225 304.12.1.0 ↗ a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.56 36.0 4.35e-01 78.5% 100.0%
4048260 304.42.1.1 ↗ a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC › MoaC 0.56 39.0 3.64e-01 72.7% 56.1%
4945880 304.42.1.1 ↗ a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC › MoaC 0.55 39.0 3.71e-01 72.7% 60.0%
3959611 304.42.1.0 ↗ a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC 0.55 39.0 3.72e-01 72.7% 62.1%
4007464 304.55.1.19 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Inovirus_Gp2 0.55 42.0 3.64e-01 89.3% 52.1%
3384464 304.127.1.0 ↗ a+b two layers › Alpha-beta plaits › Notch heterodimerization domain › Notch heterodimerization domain 0.53 37.0 3.67e-01 90.9% 66.9%
4132858 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.52 37.0 4.00e-01 78.5% 84.8%
3867900 304.47.1.0 ↗ a+b two layers › Alpha-beta plaits › SEA domain › SEA domain 0.51 40.0 3.53e-01 95.0% 54.2%
D2 high residues 146-303_352-361
PDB
Domain cluster: rep: OK632026.1__UFK27510.1__X__00028__D137-262_297-308
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13252.13 best Phage_capsid_3 59.5 4.10e-16 95.8% 40.7%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bjqA00 3.90.1690.10 Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain 0.57 52.0 4.26e-01 97.0% 59.1%
5ngjA01 2.60.40.1080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 29.0 3.91e-01 92.9% 97.6%
6s5xA01 2.60.40.3600 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 24.0 3.45e-01 92.9% 92.0%
2iepA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 28.0 3.55e-01 91.7% 88.5%
6s5wA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 29.0 3.67e-01 92.9% 93.8%
5vh2D01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.51 29.0 3.65e-01 92.9% 91.3%
2wnkA02 2.60.40.1320 Mainly Beta › Sandwich › Immunoglobulin-like › SRS domain 0.50 29.0 3.62e-01 92.9% 90.6%
2ystA01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.50 30.0 3.64e-01 92.3% 92.4%
3f40A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 28.0 3.34e-01 100.0% 81.1%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2842229 2485.3.1.9 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.89 87.0 6.45e-01 100.0% 57.8%
4890673 2485.3.1.9 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.82 79.0 5.98e-01 100.0% 57.3%
2995325 2485.3.1.9 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.77 74.0 5.53e-01 100.0% 59.2%
3963274 2485.3.1.9 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 0.71 67.0 5.10e-01 100.0% 68.8%
4929755 2485.3.1.18 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 0.67 63.0 5.24e-01 100.0% 62.2%
5044978 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.59 28.0 4.06e-01 94.6% 100.0%
3090875 2485.3.1.14 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp10A-like 0.58 53.0 4.27e-01 97.0% 62.3%
3191742 11.1.1.75 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › He_PIG 0.54 31.0 3.83e-01 92.9% 92.0%
3215936 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 32.0 3.87e-01 92.3% 90.0%
1841942 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.51 30.0 3.66e-01 92.9% 92.4%