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ON041214.1UOL51108.1X__00024

Bact-Vir

ON041214.1__UOL51108.1__X__00024

Identity

Accession:: ON041214 ↗
Kingdom:: phage

Quality

82.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Citrobacter_phage_Chris1

TaxID: 2930390

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-217

PDB

Domain cluster: rep: NC_021798.1__YP_008241581.1__Phi17-2_gp086__00086__D4-158

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00574.29 best	CLP_protease	99.5	3.00e-28	70.7%	71.4%

D2 medium residues 342-426_447-525

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF25209.3 best	Phage_capsid_4	47.0	5.70e-12	32.3%	23.4%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6q9jB02	1.20.1440.230	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain	0.53	23.0	3.02e-01	84.1%	71.6%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3977985	2485.3.1.18 ↗	a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4	0.97	95.0	7.05e-01	100.0%	52.6%
4970403	4163.1.1.0 ↗	alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like	0.50	35.0	3.86e-01	97.6%	86.7%

D3 medium residues 427-446_526-688

PDB

Domain cluster: rep: MG711462.1__AUV56456.1__X__00039__D356-478_508-525

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF25209.3 best	Phage_capsid_4	103.8	2.40e-29	91.8%	72.9%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3bjqA00	3.90.1690.10	Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain	0.70	66.0	5.51e-01	100.0%	91.9%
1ohgA02	3.30.2320.10	Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain	0.68	39.0	5.08e-01	84.2%	99.0%
2qlvB02	2.20.25.290	Mainly Beta › Single Sheet › N-terminal domain of TfIIb ›	0.59	11.0	2.57e-01	90.2%	65.8%
1yueA03	3.30.2320.40	Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold ›	0.56	36.0	4.39e-01	84.2%	97.5%
2znhA03	6.20.40.10	Special › Other non-globular › Porin MspA ribbon fold ›	0.56	18.0	3.08e-01	91.8%	95.7%
7b1cD01	2.10.90.10	Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines	0.56	22.0	2.96e-01	89.6%	67.0%
6xgpB01	3.30.1930.10	Alpha Beta › 2-Layer Sandwich › capsid protein of prophage fold › capsid protein of prophage domain	0.51	37.0	4.25e-01	81.4%	100.0%
1zoyA04	4.10.80.40	Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain	0.50	16.0	2.46e-01	90.7%	66.2%

ECOD (20)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3977985	2485.3.1.18 ↗	a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4	0.98	96.0	7.42e-01	99.5%	75.9%
5081698	2485.3.1.18 ↗	a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4	0.88	84.0	6.89e-01	100.0%	94.1%
5081455	2485.3.1.15 ↗	a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Mu-like_gpT	0.80	77.0	6.30e-01	99.5%	92.3%
3944238	2485.3.1.7 ↗	a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside	0.72	68.0	5.77e-01	100.0%	98.6%
3949155	2485.3.1.11 ↗	a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like	0.70	66.0	5.76e-01	100.0%	91.7%
3946670	2485.3.1.3 ↗	a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid	0.70	66.0	5.69e-01	100.0%	88.4%
3110786	2485.3.1.14 ↗	a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp10A-like	0.70	65.0	5.22e-01	100.0%	86.9%
3583655	2485.3.1.5 ↗	a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp23	0.70	66.0	5.36e-01	100.0%	91.6%
3075730	2485.3.1.0 ↗	a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5	0.69	65.0	5.28e-01	100.0%	88.1%
4313471	2485.3.1.11 ↗	a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like	0.69	65.0	5.42e-01	100.0%	87.3%
4988094	2485.3.1.18 ↗	a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4	0.69	65.0	5.77e-01	100.0%	92.2%
2640765	2485.3.1.1 ↗	a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E	0.69	64.0	5.10e-01	100.0%	94.1%
5081487	2485.3.1.10 ↗	a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF5309	0.68	63.0	5.50e-01	99.5%	100.0%
4995674	2485.3.1.5 ↗	a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp23	0.66	62.0	5.50e-01	100.0%	87.6%
2546181	2485.3.1.13 ↗	a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp13-like	0.66	61.0	5.01e-01	100.0%	91.3%
4954548	2485.3.1.0 ↗	a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5	0.65	61.0	5.25e-01	100.0%	94.5%
4241362	2485.3.1.0 ↗	a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5	0.65	60.0	5.10e-01	100.0%	91.9%
2988313	2485.3.1.18 ↗	a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4	0.64	60.0	5.19e-01	99.5%	91.2%
3277785	2485.3.1.0 ↗	a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5	0.59	55.0	4.82e-01	98.9%	88.8%
3977525	2485.3.1.4 ↗	a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_P2	0.59	54.0	4.44e-01	100.0%	87.7%