←Back to structures

ON041214.1__UOL51131.1__X__00047

Bact-Vir

ON041214.1__UOL51131.1__X__00047

Identity

Accession:
ON041214 ↗
Kingdom:
phage

Quality

87.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Citrobacter_phage_Chris1

TaxID: 2930390

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-161_240-265
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12792.13 best CSS-motif 43.5 3.40e-11 78.6% 59.8%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3977907 223.1.1.57 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CSS-motif 0.83 73.0 6.53e-01 92.0% 100.0%
3977017 223.1.1.57 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CSS-motif 0.83 65.0 6.01e-01 80.2% 100.0%
3972995 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.80 55.0 5.53e-01 70.6% 69.7%
3948709 223.1.1.57 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CSS-motif 0.79 62.0 5.82e-01 81.3% 100.0%
3942225 223.1.1.57 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CSS-motif 0.79 59.0 5.67e-01 76.5% 100.0%
3981448 223.1.1.57 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CSS-motif 0.78 56.0 5.53e-01 72.7% 72.8%
4009655 223.1.1.57 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CSS-motif 0.76 58.0 5.60e-01 77.5% 99.0%
3967277 223.1.1.57 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CSS-motif 0.75 57.0 5.52e-01 79.1% 99.5%
3788468 223.1.1.75 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HAMP 0.69 63.0 4.84e-01 97.3% 85.6%
3175408 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.67 61.0 5.04e-01 98.4% 99.7%
4673949 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.67 55.0 5.31e-01 86.6% 98.6%
4453642 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.66 44.0 4.54e-01 72.2% 71.4%
3985763 223.1.1.35 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_2 0.63 52.0 5.10e-01 88.8% 100.0%
D2 medium residues 162-239
PDB
Domain cluster: representative
CATH (63)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qp1A00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.74 62.0 4.70e-01 91.0% 69.7%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.68 57.0 4.46e-01 92.3% 85.5%
1yqsA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.68 57.0 3.70e-01 92.3% 92.8%
7a6pB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.67 55.0 4.60e-01 91.0% 85.5%
3by9B01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.66 53.0 4.45e-01 87.2% 77.9%
3rjuA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.64 54.0 3.52e-01 93.6% 91.7%
3esmA00 2.60.40.2230 Mainly Beta › Sandwich › Immunoglobulin-like › Uncharacterised protein YcnI-like PF07987, DUF1775 0.63 39.0 3.23e-01 83.3% 34.8%
4qd4A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.63 50.0 3.27e-01 88.5% 91.9%
7r3eB02 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.63 51.0 4.09e-01 92.3% 71.8%
4bfiB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 43.0 4.08e-01 85.9% 62.2%
3nrbB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 40.0 3.92e-01 76.9% 61.4%
3jamD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.61 52.0 4.38e-01 93.6% 57.1%
3o1lB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 40.0 3.88e-01 78.2% 59.1%
7qh2C03 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 40.0 4.05e-01 78.2% 67.9%
4dmzA02 3.30.70.2880 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 39.0 3.26e-01 79.5% 37.2%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.60 39.0 3.46e-01 80.8% 45.9%
5yppA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 39.0 3.75e-01 76.9% 56.7%
3n0vA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 39.0 3.86e-01 78.2% 61.9%
2go8A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 38.0 3.90e-01 78.2% 67.6%
3fgvA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 41.0 3.88e-01 76.9% 61.3%
2f1fA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 38.0 3.78e-01 76.9% 64.6%
3pm9A04 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 41.0 3.95e-01 80.8% 65.5%
5cxdB01 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.58 45.0 3.91e-01 83.3% 98.3%
4ctaA02 3.30.70.2860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 36.0 3.74e-01 78.2% 66.7%
2rrnA01 3.30.70.2040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 38.0 3.75e-01 78.2% 63.9%
7k0xA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 39.0 3.91e-01 85.9% 70.5%
6x4tA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 42.0 4.13e-01 87.2% 72.9%
2cryA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 42.0 3.90e-01 87.2% 61.8%
1njhA00 2.70.180.10 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF 0.56 41.0 3.70e-01 78.2% 76.9%
6efyA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 43.0 3.99e-01 88.5% 66.3%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 41.0 3.87e-01 85.9% 66.3%
7l15A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 3.85e-01 88.5% 68.1%
4ofyD02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 3.90e-01 87.2% 64.5%
1kyfA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.54 41.0 3.57e-01 79.5% 69.9%
1yz7A02 3.30.70.1130 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha 0.54 38.0 3.65e-01 76.9% 64.4%
1y0hB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 38.0 3.56e-01 78.2% 59.2%
4pg4B03 3.30.70.3100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 34.0 3.46e-01 75.6% 65.3%
1r0aH01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 3.66e-01 87.2% 65.9%
5flmA02 3.30.1360.140 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.53 44.0 3.68e-01 91.0% 68.4%
2yweA03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.53 35.0 3.44e-01 76.9% 62.2%
6hhnA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 39.0 3.66e-01 76.9% 65.2%
2zwsA02 2.60.40.2300 Mainly Beta › Sandwich › Immunoglobulin-like › Neutral/alkaline non-lysosomal ceramidase, C-terminal domain 0.53 43.0 3.65e-01 91.0% 60.4%
2od5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.91e-01 84.6% 74.7%
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.52 39.0 3.39e-01 78.2% 56.8%
5whzH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.55e-01 87.2% 65.0%
3ofkA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 43.0 3.18e-01 91.0% 72.5%
2nrqA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.52 41.0 3.44e-01 87.2% 86.9%
1hw7A01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.52 41.0 3.32e-01 92.3% 99.4%
4hlyA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.63e-01 84.6% 81.1%
4wgkA02 2.60.40.2300 Mainly Beta › Sandwich › Immunoglobulin-like › Neutral/alkaline non-lysosomal ceramidase, C-terminal domain 0.51 44.0 3.76e-01 97.4% 88.0%
1sq2N00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.46e-01 80.8% 56.2%
1ug8A00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.51 36.0 3.52e-01 87.2% 66.7%
6ofsA04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.51 42.0 3.19e-01 89.7% 44.6%
2b59A00 2.60.40.680 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 38.0 2.98e-01 79.5% 41.0%
4of8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 4.01e-01 94.9% 97.1%
6vfqA02 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.51 38.0 3.33e-01 84.6% 53.5%
3duwA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 40.0 2.99e-01 89.7% 69.9%
4dzrA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 40.0 3.23e-01 88.5% 73.0%
2wmfA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.50 41.0 3.53e-01 88.5% 92.9%
4udqA02 3.30.410.40 Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 › 0.50 35.0 2.78e-01 73.1% 66.7%
4gczB03 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.50 43.0 3.42e-01 96.2% 77.0%
1ekrA00 3.30.70.640 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain 0.50 38.0 3.11e-01 80.8% 57.3%
4q9cA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 41.0 3.72e-01 93.6% 66.7%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3508716 223.2.1.7 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.77 57.0 4.70e-01 78.2% 56.3%
3482975 223.2.1.7 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.76 57.0 4.81e-01 78.2% 59.2%
3432113 223.2.1.7 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.74 55.0 4.68e-01 78.2% 61.6%
4977897 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.73 53.0 4.43e-01 76.9% 59.3%
5077954 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.72 53.0 4.41e-01 76.9% 62.3%
4996383 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.71 54.0 4.43e-01 79.5% 59.3%
3983387 223.1.1.57 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CSS-motif 0.70 60.0 4.72e-01 92.3% 46.5%
5047061 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 51.0 4.29e-01 76.9% 64.8%
5049438 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 49.0 4.02e-01 76.9% 59.3%
3239005 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.64 54.0 3.41e-01 92.3% 60.5%
3927616 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.63 56.0 5.21e-01 96.2% 88.4%
3626407 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.63 41.0 4.40e-01 74.4% 78.5%
4932565 305.1.1.1 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.62 45.0 4.28e-01 88.5% 65.6%
3173046 304.162.1.2 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › FLAD1_M 0.62 41.0 3.96e-01 76.9% 60.7%
4952784 304.126.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.61 42.0 4.09e-01 87.2% 63.3%
3726634 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.61 45.0 4.51e-01 88.5% 76.2%
4935067 304.126.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.60 43.0 4.18e-01 87.2% 68.2%
3939844 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.60 40.0 3.92e-01 78.2% 63.5%
3508760 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.59 40.0 3.44e-01 84.6% 45.0%
4220147 304.126.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.59 41.0 4.02e-01 85.9% 67.1%
4136047 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.58 38.0 4.04e-01 75.6% 75.7%
5055338 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.58 49.0 3.86e-01 92.3% 86.9%
3789491 304.162.1.0 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.58 40.0 3.96e-01 78.2% 67.1%
3218243 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.57 43.0 4.17e-01 78.2% 78.8%
3619679 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 40.0 3.70e-01 84.6% 57.0%
4030511 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 47.0 4.04e-01 91.0% 74.4%
3215882 304.8.1.72 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › SCVP 0.56 40.0 3.83e-01 79.5% 64.4%
3879276 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.56 44.0 3.71e-01 85.9% 63.7%
4029970 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.56 36.0 3.60e-01 76.9% 63.7%
4669035 301.8.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS 0.55 41.0 3.45e-01 80.8% 98.6%
5053097 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.55 39.0 3.65e-01 80.8% 60.0%
5027042 304.19.1.1 ↗ a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.55 37.0 3.55e-01 78.2% 61.4%
3713279 304.6.1.1 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C 0.55 44.0 2.94e-01 87.2% 24.2%
2324017 3019.1.1.0 ↗ beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain 0.55 40.0 3.55e-01 79.5% 84.4%
3902600 304.133.1.1 ↗ a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.54 43.0 4.01e-01 85.9% 95.0%
3515183 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.54 45.0 3.31e-01 92.3% 80.0%
3602727 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.54 38.0 3.65e-01 85.9% 63.3%
3283943 304.8.1.80 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF6196 0.54 36.0 3.81e-01 76.9% 77.1%
4048493 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.54 38.0 3.81e-01 78.2% 72.5%
4307366 3019.1.1.0 ↗ beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain 0.53 41.0 3.72e-01 84.6% 70.0%
3614860 2003.1.5.67 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12 0.53 43.0 2.95e-01 88.5% 79.7%
4515869 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.53 38.0 3.63e-01 78.2% 65.2%
4015844 5089.1.1.0 ↗ beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains 0.53 43.0 3.13e-01 89.7% 64.0%
3973743 101.1.2.849 ↗ alpha arrays › HTH › HTH › winged helix domain › GDH_ACT2 0.53 41.0 3.89e-01 88.5% 68.4%
4133039 304.8.1.81 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › REP_ORF2-G2P 0.53 37.0 2.94e-01 78.2% 35.2%
4488103 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.53 38.0 3.64e-01 78.2% 65.6%
4048122 304.9.1.71 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › SNU71_RBD 0.52 39.0 3.29e-01 82.1% 47.7%
5043081 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 3.52e-01 92.3% 69.3%
4095823 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.52 36.0 3.53e-01 75.6% 64.8%
4264245 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.52 37.0 3.55e-01 78.2% 64.4%
3507304 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.52 42.0 3.77e-01 88.5% 63.6%
3804539 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.52 41.0 3.67e-01 84.6% 61.8%
3284425 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.52 41.0 3.17e-01 89.7% 74.2%
169085 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.52 42.0 3.19e-01 91.0% 77.7%
5026237 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.52 37.0 3.64e-01 75.6% 69.4%
3714142 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.52 40.0 3.54e-01 83.3% 57.4%
3379430 256.1.1.8 ↗ a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › Helitron_like_N 0.51 38.0 3.15e-01 78.2% 58.7%
4679172 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.51 36.0 3.65e-01 76.9% 72.5%
5616 320.1.1.1 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.51 36.0 3.52e-01 87.2% 66.7%
4629319 304.55.1.13 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Relaxase 0.51 40.0 3.45e-01 83.3% 55.0%
3933059 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.51 41.0 3.60e-01 87.2% 59.1%
5040659 256.1.1.1 ↗ a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › Archease 0.51 36.0 3.79e-01 75.6% 82.9%
3904304 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.51 42.0 3.67e-01 92.3% 80.0%
3927540 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.51 40.0 3.71e-01 84.6% 85.0%
3600296 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 37.0 2.51e-01 80.8% 20.7%
3354506 304.28.1.10 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Helitron_like_N 0.50 37.0 3.40e-01 78.2% 81.7%
3394335 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.50 43.0 3.41e-01 97.4% 75.3%
4479215 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.50 41.0 3.66e-01 93.6% 82.5%
D3 medium residues 266-329_501-519
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00563.26 best EAL 59.9 3.60e-16 75.9% 25.0%
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2r6oA00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.94 89.0 6.00e-01 98.8% 99.6%
6hq7B02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.90 80.0 5.42e-01 94.0% 100.0%
4lj3A00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.89 80.0 5.48e-01 95.2% 99.2%
3sy8C02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.89 80.0 5.48e-01 95.2% 99.6%
3pfmA00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.87 72.0 4.95e-01 86.7% 97.9%
4hu4A00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.86 78.0 5.42e-01 97.6% 98.8%
3s83A00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.85 78.0 5.39e-01 98.8% 99.2%
5xgbA03 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.82 64.0 4.42e-01 81.9% 99.6%
3hv8A00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.80 73.0 5.09e-01 97.6% 100.0%
4f3hA00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.80 66.0 4.60e-01 88.0% 98.0%
4q6jB00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.75 65.0 4.61e-01 95.2% 98.0%
6pwkA02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.70 61.0 4.33e-01 92.8% 35.9%
3kzpA00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.67 47.0 3.38e-01 73.5% 100.0%
3gfzB02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.66 49.0 3.44e-01 78.3% 90.2%
2basB01 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.62 53.0 3.86e-01 92.8% 35.0%
6nvxB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.60 42.0 4.33e-01 73.5% 77.9%
4yfbC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.57 41.0 4.21e-01 74.7% 88.5%
4yisB02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.57 41.0 3.57e-01 77.1% 67.6%
1xhnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 41.0 3.32e-01 75.9% 98.8%
4wksC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.55 38.0 3.99e-01 72.3% 85.3%
3j7aZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.53 35.0 3.76e-01 72.3% 79.2%
2xzmZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.52 35.0 3.35e-01 72.3% 58.8%
1k8kA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.51 32.0 3.17e-01 71.1% 56.5%
2qgyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 40.0 3.49e-01 89.2% 93.4%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3971399 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.97 87.0 5.81e-01 92.8% 96.2%
3941800 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.96 80.0 5.41e-01 85.5% 96.8%
3967205 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.95 91.0 6.16e-01 100.0% 100.0%
3967298 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.94 87.0 5.90e-01 96.4% 99.2%
3290182 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.94 89.0 5.98e-01 98.8% 97.7%
3983390 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.94 86.0 5.69e-01 95.2% 89.5%
3280039 2002.5.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain 0.92 85.0 5.18e-01 97.6% 58.0%
1007448 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.92 85.0 5.70e-01 97.6% 94.8%
4007436 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.91 87.0 5.89e-01 100.0% 99.6%
3978364 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.91 86.0 5.72e-01 98.8% 91.6%
3950176 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.91 84.0 5.64e-01 97.6% 94.1%
2520636 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.90 80.0 5.41e-01 94.0% 97.0%
4009640 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.90 80.0 5.43e-01 94.0% 95.4%
3972991 2002.5.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain 0.89 83.0 5.64e-01 98.8% 98.8%
3980075 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.89 84.0 5.64e-01 100.0% 96.4%
3981350 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.89 83.0 5.60e-01 98.8% 93.3%
3966569 2002.5.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain 0.89 74.0 5.12e-01 88.0% 100.0%
4206079 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.88 69.0 4.79e-01 81.9% 100.0%
1148315 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.88 75.0 5.22e-01 91.6% 100.0%
153585 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.87 81.0 5.54e-01 100.0% 98.1%
4008426 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.87 80.0 5.47e-01 97.6% 98.1%
1140806 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.87 78.0 5.31e-01 95.2% 96.9%
4542302 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.86 79.0 5.36e-01 97.6% 94.7%
4217979 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.83 67.0 4.67e-01 85.5% 96.7%
3510441 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.83 76.0 5.22e-01 98.8% 97.7%
3972453 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.80 73.0 4.92e-01 97.6% 96.0%
3974256 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.79 72.0 4.93e-01 97.6% 92.5%
868894 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.78 71.0 4.85e-01 97.6% 93.6%
3977807 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.77 68.0 5.08e-01 92.8% 46.4%
370101 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.77 71.0 4.90e-01 100.0% 96.9%
1289504 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.75 65.0 4.61e-01 95.2% 98.0%
4054365 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.74 62.0 4.30e-01 88.0% 99.2%
9010 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.73 65.0 4.49e-01 96.4% 93.4%
137563 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.67 47.0 3.38e-01 73.5% 100.0%
3203510 231.1.4.1 ↗ a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Apc (acetophenone carboxylase) beta subunit middle domain › Hydantoinase_B 0.55 41.0 3.55e-01 83.1% 95.0%
3795915 252.1.1.1 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.54 39.0 3.76e-01 77.1% 82.0%
3797644 252.1.1.0 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.54 39.0 3.52e-01 77.1% 68.3%
3599253 3167.1.1.0 ↗ a+b two layers › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) › 40S ribosomal protein rpS21 (S21e) 0.54 36.0 3.69e-01 72.3% 71.2%
5043699 3509.1.1.0 ↗ a+b complex topology › RapA C-terminal domain › RapA C-terminal domain › RapA C-terminal domain 0.53 40.0 3.11e-01 81.9% 48.9%
3409619 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.52 36.0 2.63e-01 73.5% 96.5%
4943842 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.50 36.0 2.82e-01 77.1% 57.8%