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ON041214.1UOL51133.1X__00049

Bact-Vir

ON041214.1__UOL51133.1__X__00049

Identity

Accession:: ON041214 ↗
Kingdom:: phage

Quality

78.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Citrobacter_phage_Chris1

TaxID: 2930390

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-92

PDB

Domain cluster: rep: OM816834.1__WCS67724.1__X__00031__D2-91

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06630.18 best	Exonuc_VIII	164.1	5.10e-48	100.0%	48.4%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2jxtA01	3.10.20.10	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.66	47.0	5.11e-01	76.9%	89.5%
2qsdA01	3.10.20.10	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.62	40.0	4.47e-01	96.7%	88.1%
2hfqA00	3.10.510.10	Alpha Beta › Roll › NE1680-like fold › NE1680-like	0.59	47.0	4.84e-01	85.7%	95.3%
3eipA00	3.10.50.20	Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein	0.54	37.0	3.87e-01	72.5%	100.0%
1mw7A02	3.30.70.980	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain	0.54	42.0	4.30e-01	83.5%	98.9%
3onqA02	3.30.70.2730	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.53	39.0	4.08e-01	75.8%	100.0%
1konA02	3.30.70.980	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain	0.52	41.0	4.15e-01	83.5%	87.8%
1usyC00	3.30.930.10	Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2	0.51	35.0	2.62e-01	73.6%	47.1%

ECOD (21)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4006142	2008.1.1.185 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exonuc_VIII	0.89	79.0	8.27e-01	97.8%	100.0%
3976410	3115.1.1.11 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › Exonuc_VIII	0.88	78.0	8.14e-01	98.9%	100.0%
4008166	3115.1.1.10 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › PF27430	0.79	72.0	7.14e-01	100.0%	96.8%
4996552	3115.1.1.1 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A	0.68	48.0	4.98e-01	76.9%	78.8%
4969863	3115.1.1.1 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A	0.67	48.0	5.18e-01	76.9%	89.3%
1442393	3115.1.1.1 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A	0.67	48.0	4.53e-01	76.9%	62.4%
5067865	3115.1.1.0 ↗	a+b two layers › GP2-like › RplX-like › RplX-like	0.66	46.0	5.16e-01	75.8%	95.7%
4983090	3115.1.1.1 ↗	a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A	0.65	46.0	4.92e-01	76.9%	84.8%
4502514	221.6.1.1 ↗	a+b two layers › beta-Grasp › MM3350-like › MM3350-like › PRiA4_ORF3	0.61	47.0	3.73e-01	82.4%	63.7%
4175430	1119.1.1.1 ↗	a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW	0.55	46.0	3.55e-01	98.9%	98.4%
3989300	821.1.1.3 ↗	a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172	0.54	48.0	4.55e-01	100.0%	99.1%
4151818	4007.1.1.1 ↗	a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg	0.54	43.0	4.36e-01	85.7%	96.7%
5261	304.8.1.2 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT	0.54	38.0	3.85e-01	74.7%	91.2%
3786945	4007.1.1.1 ↗	a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg	0.53	42.0	4.15e-01	83.5%	91.6%
4560889	11.1.6.5 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA-FIIND	0.53	46.0	4.21e-01	98.9%	93.6%
4487057	4007.1.1.1 ↗	a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg	0.53	41.0	4.17e-01	83.5%	94.4%
3577596	304.112.1.0 ↗	a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain	0.52	41.0	3.57e-01	85.7%	95.2%
3218109	4007.1.1.1 ↗	a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg	0.51	39.0	3.98e-01	82.4%	97.8%
3320142	4007.1.1.1 ↗	a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg	0.51	40.0	4.13e-01	84.6%	100.0%
3503254	4007.1.1.0 ↗	a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins	0.50	39.0	4.04e-01	83.5%	98.8%
3185862	4007.1.1.1 ↗	a+b two layers › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › a+b domain in YebC-like proteins › Transcrip_reg	0.50	39.0	3.55e-01	83.5%	78.3%

D2 high residues 127-238

PDB

Domain cluster: rep: ON470580.1__URC08787.1__X__00055__D131-240

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06630.18 best	Exonuc_VIII	36.8	6.00e-09	42.0%	25.8%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4krdB00	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.50	44.0	3.75e-01	98.2%	78.4%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3976412	159.1.2.10 ↗	alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › Exonuc_VIII	0.96	93.0	9.02e-01	100.0%	96.7%
4006141	2008.1.1.0 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like	0.88	82.0	8.28e-01	100.0%	100.0%
4008165	148.1.3.352 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF27432	0.84	68.0	7.31e-01	87.5%	100.0%
4010265	148.1.3.331 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF30430	0.74	61.0	6.06e-01	86.6%	87.8%

D3 high residues 401-517

PDB

Domain cluster: rep: OM816834.1__WCS67724.1__X__00031__D244-334

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1ujnA02	1.20.1090.10	Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain	0.55	39.0	3.58e-01	75.2%	95.8%
4nxtA01	1.10.1410.40	Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain ›	0.54	41.0	3.82e-01	92.3%	64.1%
3v5uA02	1.20.1420.30	Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › NCX, central ion-binding region	0.51	39.0	3.23e-01	81.2%	91.0%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4010265	148.1.3.331 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF30430	0.96	82.0	8.33e-01	88.0%	91.3%
3736654	206.1.1.82 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF7580	0.56	41.0	3.06e-01	78.6%	73.2%
3373475	185.1.1.2 ↗	alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › LTP_2	0.53	26.0	2.98e-01	82.9%	61.1%

D4 high residues 640-822

PDB

Domain cluster: rep: MZ501264.1__QZA70128.1__274BB002_59__00058__D5-186

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF16473.12 best	Rv2179c-like	222.7	4.00e-66	97.3%	99.4%

D5 medium residues 257-369

PDB

Domain cluster: rep: ON470580.1__URC08787.1__X__00055__D131-240

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06630.18 best	Exonuc_VIII	48.6	1.40e-12	42.5%	25.8%