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ON042478.1__UOX40391.1__OBDJBBDK_00067__00067

Bact-Vir

ON042478.1__UOX40391.1__OBDJBBDK_00067__00067

Identity

Accession:
ON042478 ↗
Kingdom:
phage

Quality

81.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-64
PDB
Domain cluster: representative
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.68 46.0 3.97e-01 98.4% 43.1%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 51.0 5.15e-01 100.0% 83.1%
3go5A01 2.40.50.330 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 40.0 3.86e-01 74.6% 52.1%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.66 50.0 5.23e-01 88.9% 94.5%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 55.0 5.67e-01 98.4% 100.0%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 52.0 5.29e-01 100.0% 90.3%
4npsA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 44.0 4.57e-01 81.0% 75.9%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 50.0 4.03e-01 84.1% 87.2%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 50.0 5.22e-01 100.0% 94.7%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 50.0 4.90e-01 100.0% 79.4%
3hrsA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.65 55.0 5.24e-01 100.0% 81.6%
1udlA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 50.0 4.36e-01 100.0% 55.1%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.65 37.0 3.62e-01 85.7% 50.7%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.64 54.0 5.10e-01 100.0% 80.3%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 44.0 4.50e-01 100.0% 76.7%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 49.0 4.58e-01 100.0% 67.5%
2rdgA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 46.0 4.47e-01 77.8% 100.0%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.63 53.0 5.10e-01 100.0% 87.8%
6uy8A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 47.0 4.82e-01 100.0% 91.5%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 43.0 4.63e-01 85.7% 100.0%
3e19B01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.60 50.0 5.03e-01 100.0% 96.9%
4bs9A01 3.90.930.60 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.60 52.0 4.59e-01 100.0% 83.2%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 45.0 4.63e-01 100.0% 90.0%
1bymA00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.59 49.0 4.35e-01 100.0% 63.9%
3oc4A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 50.0 4.07e-01 96.8% 93.3%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 43.0 4.29e-01 100.0% 77.3%
1br2A04 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 40.0 3.03e-01 76.2% 86.8%
4ifsA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.56 45.0 3.63e-01 90.5% 97.0%
3fcdB00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 34.0 2.82e-01 87.3% 31.9%
4trtA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.56 46.0 3.78e-01 92.1% 92.4%
3lovA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 47.0 3.63e-01 96.8% 51.3%
1xovA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 44.0 4.32e-01 92.1% 90.3%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.55 38.0 3.06e-01 74.6% 87.9%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 42.0 4.23e-01 100.0% 84.6%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.54 44.0 3.60e-01 92.1% 90.3%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.54 44.0 3.56e-01 92.1% 89.1%
4trtA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.54 44.0 3.62e-01 92.1% 91.8%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 42.0 4.04e-01 85.7% 95.9%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 44.0 2.99e-01 92.1% 46.3%
2bzyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 36.0 3.67e-01 77.8% 72.6%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.54 45.0 3.53e-01 95.2% 63.8%
3pweA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.54 43.0 3.56e-01 92.1% 92.7%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 43.0 3.55e-01 92.1% 91.7%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 43.0 3.61e-01 92.1% 97.3%
3p54A02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.53 38.0 3.71e-01 100.0% 69.0%
4tr6A01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 43.0 3.16e-01 92.1% 67.2%
2ix2A01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 46.0 3.20e-01 100.0% 39.8%
3nx3A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 41.0 3.31e-01 90.5% 72.3%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.53 40.0 2.97e-01 90.5% 83.8%
2q07A02 3.10.450.90 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain 0.53 36.0 3.61e-01 90.5% 70.8%
4ccvA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 43.0 3.57e-01 93.7% 71.3%
2k8qA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 36.0 2.89e-01 74.6% 59.0%
2p13A00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.52 37.0 3.41e-01 77.8% 89.4%
3danA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.51 40.0 2.51e-01 95.2% 62.2%
6l2cB00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.50 40.0 2.56e-01 93.7% 31.8%
3dodB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 41.0 3.10e-01 93.7% 67.3%
3o6qA02 3.30.70.2720 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 38.0 3.12e-01 95.2% 44.7%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4478186 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 47.0 5.38e-01 100.0% 93.3%
3900629 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.71 59.0 4.69e-01 93.7% 47.7%
4965868 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.68 45.0 4.57e-01 100.0% 68.3%
139950 4.1.1.126 beta barrels › SH3 › SH3 › SH3 › DUF5608 0.68 46.0 4.88e-01 100.0% 80.4%
4972872 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 45.0 5.09e-01 100.0% 95.6%
5005252 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 45.0 4.98e-01 100.0% 97.8%
4945288 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 43.0 4.91e-01 100.0% 97.7%
3386843 4263.2.1.0 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.67 46.0 4.75e-01 82.5% 76.7%
4226934 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 48.0 4.81e-01 100.0% 76.9%
4009281 219.1.1.65 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.66 47.0 4.00e-01 100.0% 45.7%
5063433 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 44.0 4.77e-01 100.0% 88.0%
4959077 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 55.0 5.55e-01 100.0% 96.9%
4954645 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.64 47.0 3.79e-01 77.8% 40.8%
4033110 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.63 55.0 5.26e-01 100.0% 90.7%
4302032 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 46.0 4.59e-01 100.0% 75.4%
5010030 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.63 36.0 4.23e-01 74.6% 87.5%
5077311 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.63 35.0 3.64e-01 85.7% 56.7%
5004476 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 45.0 4.47e-01 100.0% 75.4%
4269668 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.62 48.0 4.98e-01 96.8% 100.0%
4476045 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 46.0 4.53e-01 98.4% 75.7%
4527355 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 46.0 4.54e-01 100.0% 76.8%
5012053 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.60 52.0 4.97e-01 100.0% 90.5%
3925408 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 42.0 4.50e-01 98.4% 94.0%
5078178 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.59 50.0 4.82e-01 100.0% 86.7%
1032602 4.1.1.127 beta barrels › SH3 › SH3 › SH3 › DtxR 0.59 49.0 4.35e-01 100.0% 63.9%
4992470 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.58 42.0 4.29e-01 96.8% 78.3%
3579123 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.58 41.0 2.63e-01 74.6% 26.2%
2834165 3740.1.1.1 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_N,FrhB_FdhB_C 0.57 47.0 3.12e-01 93.7% 44.2%
5062211 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.57 47.0 3.36e-01 93.7% 84.0%
3537919 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.56 46.0 4.16e-01 93.7% 92.2%
5001118 2004.1.1.16 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.56 38.0 2.81e-01 76.2% 26.7%
4984519 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.55 42.0 4.12e-01 88.9% 78.6%
3287633 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.55 35.0 2.85e-01 84.1% 33.3%
4939039 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.55 46.0 3.28e-01 100.0% 61.4%
3015240 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.55 43.0 3.56e-01 87.3% 91.8%
3375162 220.1.1.59 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH1_SSRP1-like 0.55 39.0 3.10e-01 76.2% 86.7%
4569733 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.54 44.0 3.47e-01 92.1% 91.4%
4931543 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.54 45.0 3.09e-01 100.0% 47.9%
4992892 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.54 46.0 3.10e-01 98.4% 41.9%
5978 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.54 44.0 3.60e-01 92.1% 92.7%
4969727 230.1.1.3 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.54 45.0 3.35e-01 92.1% 59.5%
4938468 3740.1.1.4 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.54 45.0 3.04e-01 96.8% 41.5%
4279136 2003.1.5.51 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TPMT 0.54 40.0 2.79e-01 79.4% 43.6%
4484289 633.23.1.9 alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.54 44.0 3.25e-01 96.8% 94.2%
4995742 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.54 44.0 3.69e-01 92.1% 94.5%
5028765 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.54 44.0 3.42e-01 93.7% 69.3%
5053814 3740.1.1.0 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta 0.53 45.0 3.11e-01 93.7% 61.0%
4306975 2003.1.5.51 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TPMT 0.53 38.0 2.68e-01 76.2% 46.0%
4003858 883.1.1.15 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C 0.53 41.0 2.53e-01 90.5% 30.9%
3387600 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.53 42.0 3.52e-01 92.1% 94.2%
None 0.52 43.0 2.81e-01 98.4% 78.5%
3270697 223.2.1.25 a+b three layers › Profilin-like › profilin-like › profilin-like › Avl9 0.52 42.0 3.23e-01 93.7% 100.0%
4076872 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.52 42.0 2.77e-01 98.4% 78.2%
3262615 206.1.1.49 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF5898 0.52 44.0 3.34e-01 98.4% 60.0%
3254376 229.1.1.0 a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like 0.51 39.0 3.97e-01 85.7% 92.2%
4878594 2002.1.1.63 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_35 0.51 40.0 2.57e-01 92.1% 28.5%
5005203 243.6.1.9 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.51 39.0 3.66e-01 90.5% 68.8%
4565630 3018.1.1.1 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.51 38.0 3.46e-01 84.1% 61.1%
4659415 3018.1.1.1 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.50 37.0 3.40e-01 84.1% 68.9%
D2 high residues 68-148
PDB