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ON045001.1__UPU15801.1__X__00004

Bact-Vir

ON045001.1__UPU15801.1__X__00004

Identity

Accession:
ON045001 ↗
Kingdom:
phage

Quality

83.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-50
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4h8aB01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.84 56.0 5.27e-01 72.0% 58.3%
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.78 61.0 5.26e-01 84.0% 68.0%
7by3B01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.77 51.0 3.84e-01 80.0% 29.8%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.77 61.0 5.20e-01 86.0% 69.6%
2w43A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.76 56.0 5.41e-01 80.0% 78.9%
1rykA00 1.10.1470.10 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ 0.76 53.0 4.76e-01 74.0% 85.5%
2lnzA00 1.10.286.70 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › Get5 dimerization domain 0.75 52.0 5.65e-01 76.0% 92.5%
5f7vA00 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.70 51.0 3.04e-01 78.0% 82.5%
1x42A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.68 51.0 4.37e-01 82.0% 55.4%
1akhB00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 48.0 4.13e-01 74.0% 50.0%
3cjlA00 3.10.20.850 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 0.66 45.0 3.88e-01 74.0% 70.5%
3thxB02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.65 49.0 3.56e-01 84.0% 55.9%
3d8lA00 1.10.8.940 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12 0.65 44.0 3.62e-01 70.0% 38.5%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.63 44.0 3.77e-01 76.0% 42.2%
2d6fC03 1.10.150.380 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › GatB domain, N-terminal subdomain 0.58 46.0 4.64e-01 90.0% 100.0%
3otgA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.56 43.0 2.84e-01 84.0% 58.9%
1ks9A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.56 39.0 3.10e-01 76.0% 41.5%
3toyA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 44.0 3.34e-01 90.0% 39.4%
2xvtC00 1.10.150.510 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family 0.54 42.0 3.63e-01 82.0% 69.6%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4434184 1023.1.1.1 beta barrels › Cell division protein ZapC N-terminal domain › Cell division protein ZapC N-terminal domain › Cell division protein ZapC N-terminal domain › ZapC_N 0.84 58.0 4.69e-01 72.0% 40.0%
2776079 3787.1.1.0 alpha bundles › HAD superfamily helical bundle insertion domain 0.80 62.0 5.96e-01 84.0% 84.2%
5017220 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 56.0 5.18e-01 76.0% 70.8%
None 0.78 69.0 4.30e-01 100.0% 90.6%
4172408 2004.1.1.154 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2,AAA_5 0.77 67.0 4.22e-01 100.0% 89.8%
None 0.76 67.0 4.15e-01 100.0% 76.8%
4051403 2004.1.1.456 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RuvB_N, AAA_2 0.76 66.0 4.18e-01 100.0% 88.3%
None 0.76 66.0 4.15e-01 100.0% 89.4%
3962576 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.73 61.0 5.24e-01 96.0% 72.3%
2034195 2004.1.1.153 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2 0.73 57.0 4.38e-01 86.0% 45.7%
4928472 101.1.2.70 alpha arrays › HTH › HTH › winged helix domain › PqqD 0.71 50.0 4.36e-01 76.0% 92.5%
4963009 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 48.0 4.18e-01 74.0% 48.8%
4183750 101.17.1.1 alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.67 45.0 3.97e-01 76.0% 45.0%
3589794 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 47.0 4.75e-01 74.0% 88.0%
4148492 547.1.1.1 alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.66 46.0 3.94e-01 74.0% 47.5%
5055210 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.65 48.0 4.49e-01 82.0% 66.2%
4938057 2006.1.4.2 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.65 54.0 3.98e-01 92.0% 40.0%
3283312 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.64 47.0 3.67e-01 82.0% 38.3%
3636898 5104.1.1.3 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 0.61 47.0 3.33e-01 84.0% 78.8%
3469102 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.57 41.0 3.25e-01 78.0% 32.5%
3461200 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 41.0 2.84e-01 76.0% 25.8%
D2 medium residues 55-168
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kl8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.65 34.0 3.92e-01 70.2% 68.2%
2oezA01 2.60.440.10 Mainly Beta › Sandwich › YacF-like › YacF-like domains 0.63 35.0 4.07e-01 77.2% 78.2%
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 30.0 3.48e-01 70.2% 62.2%
3rrkA03 3.30.70.2750 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 31.0 3.76e-01 70.2% 77.0%
4ctaA02 3.30.70.2860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 32.0 3.79e-01 70.2% 77.3%
2cxiA01 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.58 31.0 3.57e-01 71.9% 72.2%
4nohA01 3.30.70.3060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 29.0 3.50e-01 71.9% 76.1%
5flmA02 3.30.1360.140 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.56 43.0 4.07e-01 80.7% 87.5%
4mt1A02 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.56 33.0 3.52e-01 70.2% 65.0%
7e6gA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.56 35.0 3.22e-01 70.2% 47.7%
1yz7A02 3.30.70.1130 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha 0.55 33.0 3.62e-01 70.2% 73.3%
5f9eA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 37.0 3.52e-01 81.6% 58.2%
2m9kA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 30.0 3.27e-01 71.1% 62.4%
4u1qA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 35.0 3.01e-01 72.8% 40.1%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.54 41.0 4.41e-01 88.6% 95.8%
2joeA01 3.30.1830.10 Alpha Beta › 2-Layer Sandwich › YehR-like fold › YehR-like 0.54 44.0 4.22e-01 93.9% 77.3%
1r89A03 3.30.70.590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain 0.54 34.0 3.30e-01 71.1% 54.5%
2uv8A05 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 45.0 2.90e-01 95.6% 74.2%
1x60A01 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.53 30.0 3.56e-01 70.2% 84.7%
1tuwA00 3.30.70.1090 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel. 0.52 31.0 3.20e-01 70.2% 61.3%
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.93e-01 84.2% 85.7%
2fswA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 3.76e-01 86.0% 81.4%
1xmcB03 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.51 35.0 3.08e-01 70.2% 91.5%
3d3yA01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.51 36.0 2.94e-01 74.6% 91.5%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 31.0 3.23e-01 76.3% 64.4%
5hs7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 34.0 3.65e-01 85.1% 80.6%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.50 36.0 3.20e-01 75.4% 51.5%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3385766 304.28.1.2 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Sec_GG 0.67 34.0 3.82e-01 71.1% 62.2%
5024285 3501.1.1.2 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › DUF2067 0.62 32.0 4.08e-01 70.2% 86.2%
3308135 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.61 38.0 4.21e-01 78.9% 77.8%
4962955 101.1.2.922 alpha arrays › HTH › HTH › winged helix domain › DUF7123 0.61 35.0 4.05e-01 74.6% 78.8%
3837690 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.61 35.0 4.15e-01 70.2% 84.0%
4664962 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.60 35.0 3.87e-01 70.2% 69.5%
4999908 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.60 32.0 4.07e-01 81.6% 89.2%
4985497 101.1.2.922 alpha arrays › HTH › HTH › winged helix domain › DUF7123 0.60 36.0 4.06e-01 73.7% 78.8%
4497594 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.60 32.0 3.81e-01 70.2% 77.3%
4943420 3501.1.1.2 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › DUF2067 0.60 32.0 3.92e-01 70.2% 82.9%
4964629 101.1.2.922 alpha arrays › HTH › HTH › winged helix domain › DUF7123 0.59 34.0 4.15e-01 74.6% 92.8%
4058841 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.58 33.0 3.61e-01 71.9% 67.8%
5012782 3501.1.1.2 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › DUF2067 0.58 30.0 3.90e-01 78.9% 87.7%
4040332 101.1.9.20 alpha arrays › HTH › HTH › Putative DNA-binding domain › PhetRS_B1 0.58 32.0 3.63e-01 73.7% 72.5%
3198781 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.56 35.0 3.93e-01 98.2% 83.5%
5035383 305.2.1.3 a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › PF27806 0.56 35.0 3.86e-01 75.4% 78.9%
4976823 305.2.1.0 a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) 0.56 33.0 3.94e-01 84.2% 89.3%
4171345 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.55 41.0 4.37e-01 85.1% 92.6%
3505045 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.55 33.0 2.64e-01 73.7% 27.3%
4069824 101.1.9.20 alpha arrays › HTH › HTH › Putative DNA-binding domain › PhetRS_B1 0.55 31.0 3.54e-01 72.8% 72.9%
4031210 304.159.1.1 a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB › Lant_dehydr_C 0.54 33.0 3.49e-01 71.1% 65.7%
4364399 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.54 36.0 3.96e-01 71.9% 85.6%
4983310 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.54 35.0 3.74e-01 84.2% 76.0%
4261231 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 37.0 3.82e-01 78.9% 74.5%
3250041 101.1.2.525 alpha arrays › HTH › HTH › winged helix domain › DUF7646 0.53 34.0 2.79e-01 96.5% 32.4%
5064203 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 38.0 4.24e-01 86.8% 95.6%
3877590 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.53 32.0 3.77e-01 71.1% 89.3%
4097385 327.19.1.1 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C 0.53 28.0 3.25e-01 70.2% 70.7%
3481546 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 31.0 3.70e-01 74.6% 96.9%
4116764 101.1.2.840 alpha arrays › HTH › HTH › winged helix domain › PF29821 0.53 39.0 3.99e-01 84.2% 79.1%
3341504 101.1.2.245 alpha arrays › HTH › HTH › winged helix domain › PORR 0.52 36.0 3.98e-01 90.4% 93.3%
5065554 304.139.1.2 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.51 45.0 3.21e-01 99.1% 56.2%
3876012 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.51 34.0 3.83e-01 81.6% 91.8%
4314924 328.3.1.1 a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain › IF3_C 0.51 37.0 3.78e-01 100.0% 79.1%
4949570 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.50 41.0 3.52e-01 88.6% 88.6%
3944118 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 34.0 3.77e-01 92.1% 87.8%
4979194 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 34.0 3.68e-01 84.2% 83.2%