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ON045087.1__UPU15945.1__X__00008

Bact-Vir

ON045087.1__UPU15945.1__X__00008

Identity

Accession:
ON045087 ↗
Kingdom:
phage

Quality

77.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stenotrophomonas_virus_Jojan60

TaxID: 2932861

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-84
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.71 57.0 5.28e-01 100.0% 69.6%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.70 48.0 5.52e-01 94.0% 100.0%
3n8hA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.63 38.0 3.95e-01 86.7% 64.5%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 42.0 4.64e-01 85.5% 87.7%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.60 53.0 5.14e-01 94.0% 90.0%
3ossC00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.59 39.0 4.43e-01 86.7% 87.7%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 46.0 4.88e-01 94.0% 98.6%
3fvqA03 2.40.50.470 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 33.0 3.79e-01 74.7% 77.6%
4hkhA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.58 44.0 3.70e-01 83.1% 89.3%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 34.0 3.92e-01 77.1% 80.3%
3htxA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 37.0 3.88e-01 71.1% 88.2%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.53 39.0 3.23e-01 92.8% 40.6%
2kjkA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.53 41.0 3.92e-01 84.3% 83.0%
2i6vA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 43.0 4.29e-01 90.4% 98.9%
4j6fA01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.51 43.0 3.37e-01 100.0% 93.6%
2c5wB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 42.0 2.76e-01 92.8% 61.0%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.50 39.0 4.18e-01 86.7% 98.6%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4660084 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 57.0 6.18e-01 100.0% 95.7%
4342110 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 56.0 5.97e-01 100.0% 90.4%
4261362 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 56.0 6.08e-01 100.0% 94.3%
4527355 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 56.0 6.09e-01 100.0% 95.7%
4584943 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 56.0 6.03e-01 100.0% 94.3%
4476045 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 55.0 5.97e-01 100.0% 94.3%
4429329 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 54.0 6.02e-01 98.8% 100.0%
4084850 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 54.0 5.95e-01 98.8% 100.0%
4185009 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 52.0 5.79e-01 96.4% 96.9%
4010681 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.72 53.0 5.11e-01 96.4% 68.4%
3967986 4.7.1.2 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.70 55.0 5.62e-01 95.2% 86.3%
3281271 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.70 54.0 5.28e-01 96.4% 75.6%
3511375 4.1.1.349 ↗ beta barrels › SH3 › SH3 › SH3 › ROF 0.69 53.0 5.26e-01 92.8% 78.8%
3703449 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 53.0 5.50e-01 88.0% 96.0%
3851361 4.1.1.78 ↗ beta barrels › SH3 › SH3 › SH3 › TTD 0.63 53.0 4.98e-01 94.0% 75.2%
5054112 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 46.0 5.11e-01 86.7% 98.5%
5062120 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 54.0 5.02e-01 95.2% 77.1%
3575485 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 50.0 4.63e-01 100.0% 71.8%
2097771 1.1.5.23 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP 0.59 45.0 3.61e-01 83.1% 88.2%
3738927 4.1.1.85 ↗ beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel 0.59 47.0 4.16e-01 89.2% 74.4%
3925803 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 48.0 4.51e-01 100.0% 84.5%
4321479 2.1.1.84 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_N 0.57 41.0 3.44e-01 75.9% 60.7%
5017398 7.1.1.5 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.56 45.0 4.42e-01 86.7% 88.9%
4340770 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.56 47.0 4.60e-01 98.8% 92.6%
4932742 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 41.0 3.68e-01 79.5% 90.8%
3676665 4.1.1.85 ↗ beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel 0.55 44.0 3.95e-01 90.4% 74.4%
3499266 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 38.0 3.36e-01 72.3% 93.5%
5054965 7.1.1.5 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.54 43.0 3.83e-01 85.5% 70.8%
3813787 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 49.0 4.38e-01 100.0% 99.1%
4194904 7.1.1.5 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.53 44.0 4.23e-01 90.4% 95.8%
5064678 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.52 47.0 3.89e-01 100.0% 69.0%
4810019 1.1.13.57 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF30637 0.52 38.0 3.53e-01 78.3% 83.6%
4278171 375.1.1.41 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Methyltransf_13 0.52 36.0 3.94e-01 85.5% 100.0%
3490202 5.1.4.55 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ELYS-bb 0.52 41.0 2.57e-01 90.4% 27.4%
4935286 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.52 44.0 3.61e-01 100.0% 63.5%
4644245 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.51 45.0 3.25e-01 100.0% 75.1%
3571716 2.1.1.188 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSDE1 0.51 37.0 3.63e-01 74.7% 100.0%
3217379 896.1.1.2 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 0.51 37.0 3.58e-01 77.1% 91.6%