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ON067806.1__UOX39329.1__phicjt23_gp03__00003
Bact-VirON067806.1__UOX39329.1__phicjt23_gp03__00003
Identity
- Accession:
- ON067806 ↗
- Kingdom:
- phage
Quality
84.3
mean pLDDT
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 22-126
Domain cluster:
rep: NC_015297.1__YP_004327588.1__RaPhPE226_gp9__00009__D74-176
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2arhA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.68 | 54.0 | 4.75e-01 | 85.7% | 94.3% |
| 1u8sA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.66 | 48.0 | 5.28e-01 | 97.1% | 96.4% |
| 4xrtA01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.64 | 51.0 | 4.63e-01 | 85.7% | 93.0% |
| 4qc6A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.64 | 50.0 | 4.19e-01 | 83.8% | 92.2% |
| 2vzyC00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.62 | 49.0 | 4.04e-01 | 83.8% | 63.5% |
| 3otlA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.62 | 50.0 | 4.49e-01 | 89.5% | 90.8% |
| 3n0vA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.61 | 46.0 | 5.04e-01 | 96.2% | 98.8% |
| 2q7eA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.60 | 44.0 | 3.56e-01 | 77.1% | 89.6% |
| 1s7kA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.60 | 46.0 | 4.06e-01 | 81.9% | 71.5% |
| 2r55A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.60 | 48.0 | 3.96e-01 | 89.5% | 76.9% |
| 2b9wA03 | 3.30.70.1990 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 46.0 | 4.86e-01 | 96.2% | 92.6% |
| 3nrnA02 | 3.90.660.50 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › | 0.59 | 52.0 | 4.35e-01 | 95.2% | 61.9% |
| 2ae6A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.59 | 43.0 | 3.93e-01 | 78.1% | 68.7% |
| 3r96B00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.58 | 45.0 | 3.85e-01 | 82.9% | 76.3% |
| 2lnjA00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.57 | 44.0 | 3.78e-01 | 81.9% | 86.5% |
| 4ri1C00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 45.0 | 3.83e-01 | 83.8% | 73.1% |
| 4i8oA01 | 3.30.310.240 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain | 0.57 | 43.0 | 4.61e-01 | 84.8% | 96.6% |
| 1ltxR02 | 3.30.519.10 | Alpha Beta › 2-Layer Sandwich › Guanine Nucleotide Dissociation Inhibitor; domain 2 › Guanine Nucleotide Dissociation Inhibitor, domain 2 | 0.57 | 50.0 | 4.24e-01 | 98.1% | 96.1% |
| 4xpkA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.56 | 41.0 | 3.81e-01 | 78.1% | 77.3% |
| 8fd9A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 36.0 | 4.05e-01 | 91.4% | 89.6% |
| 4uabB00 | 3.40.190.170 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 | 0.55 | 41.0 | 2.96e-01 | 78.1% | 74.2% |
| 2x45A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 41.0 | 3.74e-01 | 81.0% | 95.1% |
| 4mbrA01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 45.0 | 4.01e-01 | 94.3% | 62.7% |
| 3u2gA02 | 2.60.98.40 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › DU1608 C-terminal domain | 0.54 | 42.0 | 3.93e-01 | 82.9% | 86.8% |
| 3gjyA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 42.0 | 3.09e-01 | 83.8% | 43.4% |
| 3lmlA03 | 2.60.40.4290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 32.0 | 3.51e-01 | 79.0% | 72.9% |
| 3l4gB04 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.53 | 42.0 | 3.49e-01 | 86.7% | 86.4% |
| 2p12A01 | 2.40.380.10 | Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like | 0.53 | 43.0 | 3.80e-01 | 89.5% | 89.4% |
| 3dbaA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.53 | 38.0 | 3.27e-01 | 76.2% | 89.5% |
| 7zqiA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.53 | 33.0 | 2.83e-01 | 70.5% | 37.6% |
| 3hxlA02 | 2.60.40.4290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 32.0 | 3.42e-01 | 79.0% | 68.9% |
| 7k98B04 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.52 | 41.0 | 3.32e-01 | 86.7% | 79.4% |
| 1kcgC00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.52 | 36.0 | 3.10e-01 | 70.5% | 76.5% |
| 2kczA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 42.0 | 3.70e-01 | 90.5% | 93.5% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3265799 | 304.19.1.3 ↗ | a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › PF30773 | 0.70 | 51.0 | 5.79e-01 | 94.3% | 100.0% |
| 4038066 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.66 | 53.0 | 5.20e-01 | 96.2% | 78.9% |
| 3291529 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.64 | 43.0 | 4.33e-01 | 70.5% | 66.7% |
| 5053080 | 304.162.1.0 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain | 0.64 | 47.0 | 5.22e-01 | 94.3% | 98.8% |
| 3964191 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.64 | 57.0 | 5.57e-01 | 97.1% | 100.0% |
| 5012091 | 213.1.1.17 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › DUF1122 | 0.64 | 51.0 | 4.26e-01 | 84.8% | 77.1% |
| 3684127 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.63 | 48.0 | 5.26e-01 | 96.2% | 98.8% |
| 4440592 | 314.1.1.11 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta | 0.62 | 45.0 | 3.54e-01 | 77.1% | 92.4% |
| 4992631 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.62 | 46.0 | 4.86e-01 | 92.4% | 91.1% |
| 3967686 | 331.3.1.52 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PF28469 | 0.61 | 50.0 | 4.47e-01 | 90.5% | 95.5% |
| 3648040 | 331.17.1.1 ↗ | a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 | 0.61 | 51.0 | 4.33e-01 | 90.5% | 66.5% |
| 4588058 | 314.1.1.3 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d | 0.61 | 45.0 | 3.32e-01 | 77.1% | 71.5% |
| 3056282 | 314.1.1.11 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta | 0.60 | 44.0 | 3.25e-01 | 77.1% | 70.5% |
| 4853112 | 708.1.1.2 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › WRKY | 0.60 | 45.0 | 4.85e-01 | 82.9% | 94.3% |
| 4659427 | 314.1.1.11 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta | 0.59 | 42.0 | 3.41e-01 | 75.2% | 95.2% |
| 4556618 | 244.1.1.23 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Lycopene_cycl | 0.59 | 48.0 | 4.28e-01 | 96.2% | 62.0% |
| 4473355 | 213.1.1.27 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 | 0.57 | 42.0 | 3.87e-01 | 78.1% | 78.6% |
| None | — | 0.57 | 41.0 | 3.10e-01 | 74.3% | 39.2% | |
| 4539032 | 314.1.1.11 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta | 0.57 | 40.0 | 3.40e-01 | 73.3% | 93.7% |
| 4959674 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.57 | 42.0 | 3.75e-01 | 78.1% | 77.3% |
| 4034236 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.57 | 42.0 | 4.06e-01 | 79.0% | 74.2% |
| 3895829 | 233.1.1.3 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_alpha | 0.56 | 31.0 | 3.26e-01 | 73.3% | 55.8% |
| 3387003 | 213.1.1.64 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › DUF535 | 0.56 | 43.0 | 3.46e-01 | 82.9% | 61.4% |
| 4485546 | 71.1.1.2 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA | 0.56 | 39.0 | 3.22e-01 | 71.4% | 78.4% |
| 4971782 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.56 | 41.0 | 3.64e-01 | 78.1% | 69.7% |
| 3729267 | 708.1.2.4 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › NTP_transf_9 | 0.55 | 39.0 | 3.89e-01 | 93.3% | 70.0% |
| 4655672 | 244.1.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase | 0.55 | 43.0 | 4.13e-01 | 95.2% | 73.3% |
| 4422705 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.55 | 40.0 | 4.07e-01 | 75.2% | 89.5% |
| 154829 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.55 | 41.0 | 3.67e-01 | 79.0% | 70.4% |
| 1172545 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.55 | 44.0 | 4.45e-01 | 93.3% | 88.2% |
| 1121044 | 11.1.5.48 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Big_8 | 0.54 | 45.0 | 4.00e-01 | 94.3% | 62.3% |
| 3229859 | 1.1.17.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 | 0.54 | 45.0 | 3.41e-01 | 90.5% | 82.7% |
| 4994921 | 314.1.1.11 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta | 0.53 | 42.0 | 3.54e-01 | 86.7% | 82.6% |
| 4087551 | 213.1.1.62 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ATE_N+ATE_C | 0.53 | 43.0 | 3.31e-01 | 90.5% | 59.2% |
| 3505966 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.52 | 45.0 | 3.91e-01 | 97.1% | 97.6% |
| 4309203 | 71.1.1.2 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA | 0.52 | 36.0 | 3.07e-01 | 71.4% | 79.4% |
| 3974275 | 3454.1.1.2 ↗ | beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › T2SSC | 0.51 | 29.0 | 3.50e-01 | 75.2% | 89.2% |
| 5043521 | 5090.1.1.0 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains | 0.51 | 40.0 | 3.70e-01 | 83.8% | 97.0% |
| 170027 | 331.3.1.5 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc | 0.50 | 41.0 | 3.74e-01 | 90.5% | 99.3% |
D2
high
residues 128-298
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zfdB00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.66 | 35.0 | 4.19e-01 | 95.9% | 75.0% |
| 3fw9A03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.62 | 30.0 | 2.99e-01 | 98.8% | 41.8% |
| 1k8kD01 | 3.30.1460.20 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.59 | 36.0 | 3.82e-01 | 87.7% | 66.9% |
| 1jyoA00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.53 | 27.0 | 3.07e-01 | 95.3% | 60.8% |
| 3i1aA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 22.0 | 2.69e-01 | 81.9% | 56.3% |
| 6tpiB01 | 3.30.70.3040 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 30.0 | 3.75e-01 | 98.2% | 100.0% |
| 3p9vA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 41.0 | 4.23e-01 | 95.9% | 91.1% |
| 1fu0A00 | 3.30.1340.10 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like | 0.50 | 26.0 | 3.46e-01 | 95.9% | 95.4% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1487331 | 331.1.1.2 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › Rep_trans | 0.75 | 62.0 | 6.41e-01 | 99.4% | 92.5% |
| 3590478 | 331.1.1.2 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › Rep_trans | 0.74 | 65.0 | 6.31e-01 | 100.0% | 84.9% |
| 3590206 | 331.1.1.2 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › Rep_trans | 0.71 | 58.0 | 6.14e-01 | 97.1% | 94.2% |
| 3587399 | 331.1.1.2 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › Rep_trans | 0.68 | 60.0 | 6.11e-01 | 97.7% | 95.8% |
| 3480634 | 331.23.1.0 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain | 0.64 | 39.0 | 4.78e-01 | 95.9% | 96.3% |
| 3587406 | 331.1.1.2 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › Rep_trans | 0.61 | 54.0 | 5.43e-01 | 100.0% | 92.0% |
| 1548152 | 331.1.1.2 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › Rep_trans | 0.61 | 52.0 | 5.25e-01 | 100.0% | 88.0% |
| 3693358 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.56 | 31.0 | 3.80e-01 | 94.7% | 85.7% |
| 4524847 | 329.1.1.1 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD | 0.55 | 32.0 | 3.59e-01 | 95.9% | 73.1% |
| 4366817 | 329.1.1.1 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD | 0.55 | 32.0 | 3.56e-01 | 95.9% | 73.1% |
| 4259426 | 329.1.1.1 ↗ | a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › GAD | 0.54 | 33.0 | 3.59e-01 | 95.9% | 73.3% |
| 4885763 | 314.1.1.43 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › GAD | 0.54 | 31.0 | 3.51e-01 | 95.9% | 73.1% |
| 3259003 | 2.1.1.337 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › GAD | 0.53 | 32.0 | 3.47e-01 | 94.7% | 70.7% |
D3
high
residues 317-393
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1z6oM00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.64 | 52.0 | 3.80e-01 | 85.7% | 41.9% |
| 1c1kA02 | 1.10.220.50 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Bacteriophage T4, Gp59, helicase assembly protein, C-terminal domain | 0.62 | 47.0 | 4.15e-01 | 80.5% | 91.3% |
| 2ijqA00 | 1.10.3450.10 | Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › TTHA0068-like | 0.62 | 49.0 | 4.02e-01 | 85.7% | 82.8% |
| 2rekA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.59 | 48.0 | 3.84e-01 | 93.5% | 57.6% |
| 6q9jB02 | 1.20.1440.230 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain | 0.59 | 46.0 | 4.45e-01 | 98.7% | 73.9% |
| 1hypA00 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.57 | 43.0 | 4.36e-01 | 98.7% | 84.0% |
| 1gakA00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.57 | 45.0 | 3.68e-01 | 84.4% | 72.3% |
| 1tqgA00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.56 | 47.0 | 4.23e-01 | 96.1% | 65.7% |
| 4it4A02 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.56 | 49.0 | 4.64e-01 | 97.4% | 81.3% |
| 2rn7A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 36.0 | 3.81e-01 | 77.9% | 77.3% |
| 4zhbA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.54 | 42.0 | 3.87e-01 | 100.0% | 64.4% |
| 2oqmB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.53 | 38.0 | 3.05e-01 | 76.6% | 94.1% |
| 3vprA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 44.0 | 3.72e-01 | 100.0% | 70.3% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5067468 | 4133.1.1.0 ↗ | alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like | 0.70 | 53.0 | 5.68e-01 | 100.0% | 96.9% |
| 4927006 | 601.3.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt | 0.69 | 47.0 | 4.14e-01 | 71.4% | 67.8% |
| 4442882 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.69 | 54.0 | 5.19e-01 | 87.0% | 84.4% |
| 4379330 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.66 | 45.0 | 4.93e-01 | 96.1% | 90.0% |
| 4988832 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.61 | 44.0 | 4.77e-01 | 96.1% | 90.8% |
| 3920662 | 109.4.1.917 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_TT21_N | 0.60 | 44.0 | 4.16e-01 | 98.7% | 63.2% |
| 4016796 | 509.1.1.0 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain | 0.59 | 40.0 | 3.90e-01 | 94.8% | 62.2% |
| None | — | 0.59 | 45.0 | 3.01e-01 | 84.4% | 21.0% | |
| 4196658 | 1175.1.1.1 ↗ | alpha complex topology › Apolipoprotein N-acyltransferase transmembrane domain › Apolipoprotein N-acyltransferase transmembrane domain › Apolipoprotein N-acyltransferase transmembrane domain › LNT_N | 0.59 | 51.0 | 3.92e-01 | 100.0% | 83.2% |
| 4028395 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.58 | 41.0 | 3.75e-01 | 77.9% | 54.3% |
| 3808331 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.57 | 52.0 | 3.43e-01 | 100.0% | 53.8% |
| 3205900 | 2004.1.1.194 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C_2 | 0.56 | 42.0 | 2.92e-01 | 81.8% | 67.5% |
| 151182 | 191.1.1.26 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_24 | 0.56 | 42.0 | 3.72e-01 | 81.8% | 81.4% |
| 4943027 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.55 | 43.0 | 3.52e-01 | 88.3% | 92.9% |
| 3386367 | 601.3.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt | 0.54 | 48.0 | 3.94e-01 | 96.1% | 84.4% |
| 4464661 | 601.3.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt | 0.54 | 47.0 | 3.93e-01 | 96.1% | 80.7% |
| 3932902 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.53 | 49.0 | 4.36e-01 | 100.0% | 90.5% |
| 5039995 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 42.0 | 2.62e-01 | 88.3% | 16.0% |
| 3497466 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.51 | 43.0 | 4.17e-01 | 94.8% | 85.6% |
| 3484245 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.50 | 39.0 | 3.76e-01 | 88.3% | 96.7% |