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ON087563.1__UPU16021.1__OTAKU_00320__00032

Bact-Vir

ON087563.1__UPU16021.1__OTAKU_00320__00032

Identity

Accession:
ON087563 ↗
Kingdom:
phage

Quality

90.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sarkviridae› Otakuvirus› Serratia_phage_vB_SmaM-Otaku

TaxID: 2932867

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-59
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yxyA01 1.10.287.880 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Hypothetical protein YfhH domain 0.77 58.0 6.20e-01 80.7% 100.0%
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.75 52.0 4.36e-01 73.7% 63.2%
1ldjA01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.73 50.0 3.84e-01 71.9% 32.8%
1fs0G02 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.69 49.0 4.22e-01 75.4% 49.4%
5w0kA01 3.90.380.20 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II 0.66 55.0 3.42e-01 94.7% 26.2%
1b06A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.65 46.0 4.38e-01 73.7% 95.5%
6t0bc01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 46.0 4.18e-01 75.4% 64.1%
3l1nA01 6.10.140.790 Special › Helix non-globular › Helix Hairpins › 0.65 45.0 4.71e-01 73.7% 90.2%
1m62A00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.65 57.0 5.00e-01 100.0% 78.2%
2mpnA00 6.10.140.1340 Special › Helix non-globular › Helix Hairpins › 0.64 44.0 4.24e-01 73.7% 67.6%
5u9nB00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.62 52.0 4.22e-01 100.0% 74.2%
2jx4A01 6.10.140.460 Special › Helix non-globular › Helix Hairpins › 0.60 42.0 4.47e-01 77.2% 91.7%
4bthA00 1.10.439.10 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 0.60 44.0 3.22e-01 94.7% 28.0%
2xokP00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.59 41.0 3.78e-01 73.7% 56.8%
2lfhA00 4.10.280.10 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain 0.57 34.0 3.25e-01 98.2% 50.0%
5iduC03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.57 48.0 3.59e-01 100.0% 71.7%
1iurA01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.57 48.0 4.71e-01 100.0% 90.5%
1khtB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 47.0 3.33e-01 100.0% 32.5%
4bwrA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 46.0 2.74e-01 100.0% 16.9%
5tjjB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 44.0 3.18e-01 93.0% 44.9%
2ds2D01 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.54 44.0 4.40e-01 96.5% 89.5%
1g2rA00 3.30.1230.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like 0.54 45.0 3.88e-01 96.5% 89.4%
3pntB00 1.25.40.520 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 43.0 3.27e-01 96.5% 44.4%
2wg7A00 1.20.90.10 Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain 0.53 44.0 3.58e-01 100.0% 66.1%
1avvA00 3.30.62.10 Alpha Beta › 2-Layer Sandwich › Nef Regulatory Factor › Nef Regulatory Factor 0.53 43.0 3.59e-01 89.5% 93.9%
3tthB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 44.0 3.22e-01 94.7% 77.4%
2looA02 1.10.10.1740 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transmembrane protein 14-like 0.52 44.0 4.14e-01 100.0% 81.3%
1t3qC03 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.52 45.0 3.69e-01 100.0% 83.8%
1q1vA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.51 41.0 3.91e-01 100.0% 74.3%
4qozB02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 43.0 2.93e-01 96.5% 95.5%
8gr7A01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.51 41.0 2.68e-01 100.0% 38.0%
1ysqA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.50 40.0 2.96e-01 96.5% 44.2%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3952446 5055.1.1.0 ↗ extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel 0.84 62.0 5.90e-01 100.0% 67.7%
3471730 192.17.1.0 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.80 62.0 6.35e-01 82.5% 90.9%
3392031 2002.3.1.23 ↗ a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › Glyco_hydro_15 0.71 57.0 3.92e-01 96.5% 24.9%
4182426 192.6.1.2 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATPD_C_fung 0.71 54.0 5.87e-01 82.5% 100.0%
3241020 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.70 56.0 3.85e-01 98.2% 24.8%
3798345 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 56.0 3.81e-01 94.7% 24.4%
4357993 3291.1.1.58 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › QcrA_N 0.68 49.0 3.87e-01 77.2% 44.2%
3576779 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.68 57.0 4.56e-01 94.7% 84.3%
4612826 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.67 46.0 4.12e-01 71.9% 82.5%
5074974 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.66 57.0 3.78e-01 96.5% 58.3%
3249030 5042.1.1.0 ↗ extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region 0.66 46.0 3.31e-01 73.7% 47.0%
3720929 109.39.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › transcription anti-terminator antagonist UpxZ › transcription anti-terminator antagonist UpxZ 0.65 53.0 3.42e-01 91.2% 31.8%
3214392 633.21.1.0 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.65 56.0 4.04e-01 96.5% 92.7%
3190266 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 53.0 3.37e-01 94.7% 37.7%
3475898 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 52.0 3.39e-01 98.2% 21.3%
4949171 2003.2.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 0.60 46.0 3.37e-01 82.5% 63.4%
4386562 110.1.1.28 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › Dredd_2nd 0.59 40.0 3.37e-01 70.2% 55.8%
3600638 192.17.1.0 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.58 41.0 4.01e-01 75.4% 68.8%
3328692 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.58 49.0 3.76e-01 100.0% 73.1%
3710550 109.3.1.164 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4 0.55 44.0 2.97e-01 93.0% 38.7%
3506842 102.1.1.11 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4 0.54 41.0 3.33e-01 87.7% 40.8%
4527734 101.1.1.36 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.53 47.0 4.50e-01 100.0% 96.9%
5057676 192.4.1.1 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 0.52 45.0 4.16e-01 100.0% 84.0%
4944776 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.52 42.0 2.74e-01 93.0% 43.6%
5030079 2002.1.1.60 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.52 45.0 2.64e-01 98.2% 13.1%
157116 223.1.1.4 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.50 40.0 2.96e-01 96.5% 44.2%