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ON087563.1__UPU16051.1__OTAKU_00620__00062

Bact-Vir

ON087563.1__UPU16051.1__OTAKU_00620__00062

Identity

Accession:
ON087563 ↗
Kingdom:
phage

Quality

66.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sarkviridae› Otakuvirus› Serratia_phage_vB_SmaM-Otaku

TaxID: 2932867

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-123
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2b0rB00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.81 57.0 5.15e-01 95.0% 55.1%
1k8fA00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.79 59.0 5.32e-01 100.0% 59.2%
3petA00 2.160.20.120 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.76 56.0 4.55e-01 100.0% 42.2%
3b4nA02 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.74 68.0 5.44e-01 100.0% 53.5%
4oj5C04 2.160.20.130 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.73 61.0 5.23e-01 94.2% 57.8%
3vsvA01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.72 65.0 4.20e-01 100.0% 22.7%
4i84A00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.68 61.0 4.54e-01 98.3% 49.0%
1rwrA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.67 61.0 4.57e-01 100.0% 62.0%
5gkdA02 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.67 61.0 4.60e-01 100.0% 53.3%
4w8qA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.65 60.0 4.76e-01 100.0% 78.2%
3lycA00 2.160.20.120 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.65 56.0 4.42e-01 100.0% 46.5%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4406918 207.6.1.16 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › FARP 0.83 58.0 5.64e-01 100.0% 66.2%
3785316 207.4.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like 0.82 63.0 6.17e-01 100.0% 73.8%
3769689 207.14.1.3 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › DUF5585 0.76 45.0 5.50e-01 99.2% 93.3%
3572525 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.75 44.0 5.30e-01 94.2% 87.5%
3256801 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.75 67.0 4.94e-01 100.0% 39.7%
3708837 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.71 53.0 4.70e-01 100.0% 53.7%
5022823 207.8.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD 0.71 65.0 4.77e-01 100.0% 51.0%
3483229 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.71 65.0 4.30e-01 100.0% 50.3%
4030372 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.71 54.0 5.18e-01 100.0% 71.1%
4990150 207.8.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD 0.70 64.0 4.47e-01 100.0% 36.5%
2409669 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.69 63.0 4.42e-01 100.0% 33.2%
3629898 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.69 42.0 5.17e-01 79.2% 100.0%
3355383 207.8.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD 0.69 62.0 4.68e-01 99.2% 49.7%
4024907 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.67 57.0 5.66e-01 100.0% 87.2%
3273919 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.66 61.0 4.50e-01 100.0% 45.3%
3598057 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.66 60.0 4.23e-01 100.0% 33.5%
3175357 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.66 55.0 5.15e-01 89.2% 96.6%
1316582 207.2.1.17 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › LiaF-like_C,Toast_rack_N 0.65 59.0 4.87e-01 100.0% 91.5%
3974743 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.63 44.0 4.81e-01 83.3% 87.0%
3869345 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.62 56.0 4.59e-01 100.0% 62.2%
4643528 208.2.1.11 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › Ice_nucleation 0.62 46.0 4.79e-01 100.0% 84.5%
3305986 208.7.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Grass antifreeze protein › Grass antifreeze protein 0.62 43.0 4.38e-01 99.2% 73.9%
3855439 207.8.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD 0.61 55.0 4.18e-01 100.0% 47.4%
5057019 207.7.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Alpha subunit of glutamate synthase-C › Alpha subunit of glutamate synthase-C 0.59 53.0 4.25e-01 100.0% 56.6%