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ON107243.1__UOX38084.1__X__00038

Bact-Vir

ON107243.1__UOX38084.1__X__00038

Identity

Accession:
ON107243 ↗
Kingdom:
phage

Quality

91.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-57
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kyiA00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.72 61.0 4.74e-01 100.0% 62.5%
8thmA01 1.20.120.1310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Carboxysome Shell Carbonic Anhydrase, N-terminal helical domain 0.71 58.0 5.28e-01 100.0% 76.2%
4eekA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.69 50.0 4.70e-01 77.8% 65.2%
2fgyA01 1.20.120.1310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Carboxysome Shell Carbonic Anhydrase, N-terminal helical domain 0.68 59.0 4.75e-01 100.0% 64.5%
3s27A02 1.20.120.1230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.66 58.0 4.42e-01 100.0% 41.9%
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.66 50.0 4.04e-01 100.0% 45.3%
7wu8B01 1.20.1160.20 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › 0.65 48.0 4.30e-01 81.5% 64.6%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.65 54.0 4.80e-01 100.0% 95.3%
4kxfB02 1.10.1900.50 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › 0.64 43.0 4.28e-01 70.4% 84.2%
2p6vA00 1.20.120.1110 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › TAFH/NHR1 domain 0.64 54.0 4.53e-01 98.1% 76.3%
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.63 50.0 4.24e-01 87.0% 58.4%
2dbaA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 44.0 3.48e-01 74.1% 66.1%
1pjrA04 1.10.486.10 Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 0.61 48.0 3.72e-01 92.6% 96.4%
2e5yA02 1.20.5.440 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain 0.61 44.0 4.67e-01 100.0% 91.1%
2i6xA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 49.0 4.55e-01 92.6% 69.0%
3tviA01 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.61 49.0 3.28e-01 100.0% 56.7%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.60 43.0 3.98e-01 83.3% 61.7%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.60 37.0 3.54e-01 87.0% 54.8%
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 4.06e-01 85.2% 61.6%
3eabE00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.59 41.0 3.57e-01 72.2% 84.9%
3kavA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.58 41.0 3.43e-01 75.9% 68.6%
2lh9A00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.58 46.0 4.17e-01 90.7% 69.2%
1vkeB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.58 43.0 3.58e-01 83.3% 53.5%
3ajfA00 1.20.1440.190 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tenuivirus movement protein 0.57 40.0 3.41e-01 74.1% 79.3%
3s93A00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.57 46.0 4.08e-01 90.7% 67.5%
3b81A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 47.0 3.40e-01 100.0% 30.1%
4xb1A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.57 47.0 3.61e-01 96.3% 79.1%
3atsA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.57 44.0 2.92e-01 83.3% 65.3%
3iruA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 37.0 3.42e-01 70.4% 71.8%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 3.94e-01 98.1% 67.2%
3dv9A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 42.0 3.94e-01 85.2% 67.1%
3qavA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 39.0 2.94e-01 98.1% 29.3%
2riqA01 1.10.20.130 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.55 41.0 3.96e-01 88.9% 68.2%
2etnB01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.55 38.0 3.51e-01 100.0% 53.9%
2m63A00 1.25.40.780 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 46.0 3.40e-01 100.0% 38.2%
4usaA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.54 45.0 3.62e-01 100.0% 72.3%
2cwyA00 1.10.3450.10 Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › TTHA0068-like 0.54 45.0 3.91e-01 100.0% 86.0%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 3.76e-01 94.4% 84.8%
6rxaA01 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.54 38.0 3.49e-01 83.3% 58.6%
5fhiA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 38.0 2.96e-01 77.8% 84.9%
2elcA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.53 39.0 3.64e-01 98.1% 62.7%
4e12A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.53 44.0 3.83e-01 98.1% 58.6%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.53 41.0 4.05e-01 87.0% 88.3%
1fs0G02 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.53 49.0 4.08e-01 100.0% 76.4%
3jsbA01 1.20.1440.300 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain 0.53 49.0 4.20e-01 100.0% 96.3%
3kbbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 40.0 3.72e-01 87.0% 67.1%
1rdfA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 37.0 3.42e-01 83.3% 73.1%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4405928 5086.1.1.196 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_YknX 0.72 51.0 4.63e-01 100.0% 57.1%
3979725 3291.1.1.15 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › DUF2583 0.72 51.0 4.19e-01 100.0% 44.4%
5079851 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 53.0 5.17e-01 92.6% 73.3%
5016992 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 49.0 5.29e-01 83.3% 88.9%
3924866 170.1.1.0 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.69 61.0 5.09e-01 100.0% 72.6%
3618803 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 60.0 5.81e-01 98.1% 90.0%
4497850 3500.1.1.2 alpha bundles › ENOD40 peptide-binding domain in sucrose synthase-1 › ENOD40 peptide-binding domain in sucrose synthase-1 › ENOD40 peptide-binding domain in sucrose synthase-1 › SUS_EPBD 0.68 60.0 4.54e-01 100.0% 41.5%
4274627 101.1.1.266 alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.66 49.0 4.80e-01 85.2% 73.3%
3980764 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 49.0 5.28e-01 85.2% 95.6%
5029224 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 49.0 4.75e-01 92.6% 73.3%
3962597 101.1.3.13 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Transposase_mut 0.65 48.0 4.59e-01 83.3% 66.2%
4932774 101.40.1.1 alpha arrays › HTH › 40S ribosomal protein S13 N-terminal domain › 40S ribosomal protein S13 N-terminal domain › Ribosomal_S13_N 0.65 49.0 4.36e-01 83.3% 63.7%
4027771 4106.1.1.1 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.65 48.0 3.24e-01 100.0% 21.0%
5070167 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 47.0 4.68e-01 83.3% 74.5%
4959187 101.1.2.489 alpha arrays › HTH › HTH › winged helix domain › Transposase_mut 0.65 48.0 4.95e-01 85.2% 84.0%
3958041 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 48.0 4.53e-01 83.3% 66.2%
5013811 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 54.0 5.40e-01 98.1% 90.9%
4926838 101.43.1.0 alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain 0.65 50.0 4.70e-01 87.0% 69.2%
3957316 101.1.1.266 alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.65 48.0 4.53e-01 83.3% 66.2%
5028095 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.64 48.0 3.95e-01 92.6% 42.9%
5049604 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 49.0 4.92e-01 85.2% 80.0%
3574610 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.64 38.0 2.61e-01 75.9% 16.0%
3487537 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 48.0 4.92e-01 90.7% 92.0%
3707405 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.62 42.0 3.34e-01 70.4% 38.2%
5029249 101.40.1.1 alpha arrays › HTH › 40S ribosomal protein S13 N-terminal domain › 40S ribosomal protein S13 N-terminal domain › Ribosomal_S13_N 0.61 47.0 4.19e-01 83.3% 63.7%
3971395 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.61 42.0 3.88e-01 90.7% 53.3%
4430369 132.1.1.1 alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.61 51.0 4.58e-01 98.1% 100.0%
4927588 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 52.0 4.67e-01 98.1% 77.3%
3898566 192.5.1.14 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA 0.59 48.0 3.47e-01 100.0% 33.6%
3664055 3317.3.1.1 alpha arrays › KorB C-terminal domain-like › Helical domain of Rubisco accumulation factor 1 › Helical domain of Rubisco accumulation factor 1 › Raf1_N 0.58 40.0 3.05e-01 74.1% 35.6%
3786258 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 43.0 4.35e-01 85.2% 96.4%
3929245 101.1.1.103 alpha arrays › HTH › HTH › Three-helical HTH › DUF4817 0.58 50.0 5.00e-01 98.1% 96.4%
5066355 101.1.2.181 alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.57 43.0 3.76e-01 85.2% 51.1%
5027917 2484.1.1.101 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.57 47.0 3.15e-01 98.1% 95.8%
865208 3560.1.1.0 a+b complex topology › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 › Mediator of RNA polymerase II transcription subunit 8 0.57 39.0 2.76e-01 72.2% 52.9%
3616490 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.55 43.0 3.21e-01 100.0% 32.0%
5051575 2004.5.1.0 a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain 0.55 44.0 3.19e-01 98.1% 28.3%
3864955 633.22.1.6 alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) › TMD0_ABC 0.55 46.0 3.20e-01 100.0% 29.4%
5031473 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.55 47.0 3.84e-01 98.1% 78.1%
5032563 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.55 44.0 3.55e-01 90.7% 67.0%
3927159 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.55 40.0 3.02e-01 100.0% 31.4%
4929815 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 45.0 4.36e-01 98.1% 95.4%
3998454 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.55 38.0 3.26e-01 75.9% 84.2%
4028552 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.54 51.0 3.19e-01 100.0% 30.6%
3274011 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.54 44.0 4.25e-01 96.3% 80.0%
4271175 101.1.2.498 alpha arrays › HTH › HTH › winged helix domain › PF25870 0.54 42.0 3.21e-01 90.7% 34.8%
3685 4266.2.1.1 alpha bundles › Hyaluronidase domain-like › TTHA0068-like › TTHA0068-like › DUF309 0.54 45.0 3.90e-01 100.0% 85.1%
2394140 1203.1.2.1 alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › ASD2 0.54 50.0 3.42e-01 100.0% 98.2%
2559826 2004.1.1.85 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ArsA_ATPase 0.53 44.0 2.81e-01 98.1% 99.1%
1106555 3812.1.1.1 alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE › T3SS_needle_E 0.52 39.0 3.69e-01 100.0% 68.2%
3727210 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 44.0 2.59e-01 100.0% 15.7%
3498924 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.50 39.0 3.14e-01 100.0% 98.6%