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ON108645.1__UOW93077.1__SEA_NOSHOW_8__00008
Bact-VirON108645.1__UOW93077.1__SEA_NOSHOW_8__00008
Identity
- Accession:
- ON108645 ↗
- Kingdom:
- phage
Quality
63.0
mean pLDDT
Taxonomy
TaxID: 2927257
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-71
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ckaA01 | 3.40.5.120 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.69 | 52.0 | 5.21e-01 | 81.6% | 87.8% |
| 3jr7A02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.67 | 44.0 | 4.79e-01 | 73.5% | 89.5% |
| 1i7dA03 | 2.70.20.10 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 | 0.66 | 46.0 | 3.31e-01 | 73.5% | 87.9% |
| 3fmaA00 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.65 | 46.0 | 3.97e-01 | 77.6% | 63.0% |
| 2qqrA02 | 3.10.330.70 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.65 | 44.0 | 4.30e-01 | 71.4% | 100.0% |
| 4gi3C00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.62 | 44.0 | 4.25e-01 | 79.6% | 64.9% |
| 1sb7A02 | 3.30.2340.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › TruD, insertion domain | 0.62 | 51.0 | 3.85e-01 | 100.0% | 52.9% |
| 5ja1B00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.61 | 49.0 | 4.40e-01 | 93.9% | 63.6% |
| 2cs4A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.60 | 43.0 | 3.56e-01 | 79.6% | 41.1% |
| 2o3iA01 | 3.40.1610.10 | Alpha Beta › 3-Layer(aba) Sandwich › CV3147-like fold › CV3147-like domain | 0.60 | 41.0 | 2.70e-01 | 73.5% | 22.5% |
| 2pstX00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.58 | 46.0 | 4.31e-01 | 87.8% | 70.5% |
| 1pzxA02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.58 | 39.0 | 4.12e-01 | 73.5% | 97.1% |
| 4id8A00 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 38.0 | 3.61e-01 | 71.4% | 100.0% |
| 7k9cA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 47.0 | 3.99e-01 | 98.0% | 100.0% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.56 | 40.0 | 3.87e-01 | 81.6% | 72.1% |
| 3deeA02 | 3.90.930.50 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.56 | 39.0 | 3.05e-01 | 75.5% | 87.7% |
| 4chkB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 40.0 | 3.39e-01 | 79.6% | 81.3% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.55 | 37.0 | 3.77e-01 | 73.5% | 82.0% |
| 2piaA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 40.0 | 3.20e-01 | 79.6% | 60.6% |
| 4x9xA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 42.0 | 3.09e-01 | 87.8% | 84.6% |
| 4wz2C00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.55 | 42.0 | 3.66e-01 | 83.7% | 64.9% |
| 1ccwB02 | 3.90.970.10 | Alpha Beta › Alpha-Beta Complex › Glutamate mutase, C-terminal domain › | 0.54 | 42.0 | 4.03e-01 | 100.0% | 89.4% |
| 2dt8A01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 41.0 | 3.03e-01 | 89.8% | 84.6% |
| 3in6A02 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 40.0 | 3.30e-01 | 98.0% | 98.3% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.52 | 37.0 | 3.42e-01 | 83.7% | 65.8% |
| 3fdjA02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.52 | 35.0 | 3.66e-01 | 73.5% | 97.4% |
| 1w1oA02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.52 | 36.0 | 2.78e-01 | 73.5% | 30.7% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.52 | 38.0 | 3.30e-01 | 85.7% | 92.4% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.52 | 41.0 | 3.02e-01 | 98.0% | 71.9% |
| 8be0A01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.51 | 41.0 | 2.92e-01 | 100.0% | 49.2% |
| 4umgA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 36.0 | 2.95e-01 | 77.6% | 50.0% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3991455 | 822.2.1.1 ↗ | a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like › BRK | 0.72 | 51.0 | 4.95e-01 | 75.5% | 70.9% |
| 1032560 | 822.2.1.1 ↗ | a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like › BRK | 0.68 | 51.0 | 4.31e-01 | 81.6% | 51.8% |
| 3400250 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.67 | 47.0 | 4.74e-01 | 79.6% | 74.0% |
| 4025385 | 2003.1.5.82 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 | 0.66 | 56.0 | 3.81e-01 | 95.9% | 40.0% |
| 4950662 | 1056.1.1.1 ↗ | a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD | 0.64 | 56.0 | 3.67e-01 | 100.0% | 37.1% |
| 4158495 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.63 | 49.0 | 4.06e-01 | 87.8% | 88.9% |
| 4980159 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.63 | 52.0 | 3.43e-01 | 100.0% | 80.0% |
| 3407580 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.62 | 46.0 | 4.17e-01 | 87.8% | 57.1% |
| 5025086 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.62 | 43.0 | 4.17e-01 | 73.5% | 94.5% |
| 153859 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.62 | 44.0 | 4.25e-01 | 79.6% | 64.9% |
| 3807153 | 221.1.1.88 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › CLU_N | 0.62 | 43.0 | 3.49e-01 | 81.6% | 37.0% |
| 3388590 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.61 | 45.0 | 4.30e-01 | 81.6% | 66.7% |
| 3309579 | 304.137.1.0 ↗ | a+b two layers › Alpha-beta plaits › NOL1/NOP2/sun N-terminal ferredoxin-like domain › NOL1/NOP2/sun N-terminal ferredoxin-like domain | 0.61 | 49.0 | 4.76e-01 | 93.9% | 100.0% |
| 3461223 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.60 | 39.0 | 3.72e-01 | 79.6% | 55.0% |
| 3969006 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.60 | 41.0 | 4.29e-01 | 73.5% | 84.4% |
| 3405249 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.59 | 45.0 | 4.42e-01 | 93.9% | 77.4% |
| 4004704 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.59 | 41.0 | 4.23e-01 | 73.5% | 84.4% |
| 3933289 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 46.0 | 4.79e-01 | 98.0% | 95.6% |
| 3998356 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.58 | 39.0 | 4.04e-01 | 73.5% | 91.1% |
| 1568132 | 10.32.1.52 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GH115_C | 0.57 | 39.0 | 2.92e-01 | 73.5% | 64.2% |
| 3687944 | 7590.1.1.2 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi | 0.55 | 39.0 | 2.73e-01 | 75.5% | 72.6% |
| 3508713 | 382.1.1.25 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › YjeJ | 0.55 | 42.0 | 3.25e-01 | 85.7% | 63.3% |
| 3969444 | 2007.1.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like | 0.54 | 42.0 | 2.75e-01 | 93.9% | 88.3% |
| 1891681 | 7590.1.1.2 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi | 0.54 | 42.0 | 3.01e-01 | 91.8% | 99.4% |
| 4330785 | 2003.1.1.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase | 0.54 | 44.0 | 2.71e-01 | 98.0% | 53.9% |
| 2418726 | 2010.1.1.1 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV | 0.53 | 37.0 | 2.79e-01 | 81.6% | 45.6% |
| 4652722 | 2010.1.1.1 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV | 0.53 | 42.0 | 3.29e-01 | 100.0% | 71.1% |
| 3603150 | 2004.1.1.220 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 | 0.52 | 38.0 | 2.62e-01 | 89.8% | 29.6% |
| 3780596 | 109.4.1.291 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUF_NOP9 | 0.51 | 39.0 | 2.26e-01 | 93.9% | 13.0% |