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ON108651.1__UOW93711.1__SEA_WRIGLEY_48__00048

Bact-Vir

ON108651.1__UOW93711.1__SEA_WRIGLEY_48__00048

Identity

Accession:
ON108651 ↗
Kingdom:
phage

Quality

82.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-82
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bskB00 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.66 45.0 4.93e-01 70.7% 93.8%
3l9wA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.64 43.0 3.37e-01 75.6% 34.4%
5jazA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.63 40.0 3.85e-01 70.7% 57.1%
2mpkA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.60 41.0 4.33e-01 79.3% 79.7%
3v9rA00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.59 40.0 3.94e-01 70.7% 87.5%
1b3qA01 1.10.287.560 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain 0.57 40.0 4.57e-01 89.0% 96.8%
2ckoA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.57 45.0 3.19e-01 87.8% 72.0%
4bx9C00 1.10.150.780 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Vps16, C-terminal region 0.55 39.0 3.76e-01 74.4% 67.4%
4lp8A01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 42.0 3.91e-01 84.1% 93.3%
2lw1A00 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.52 40.0 3.97e-01 91.5% 78.8%
1r3bA01 1.20.140.30 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › MOB kinase activator 0.51 39.0 3.07e-01 81.7% 73.6%
1v07A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.50 38.0 3.44e-01 79.3% 99.1%
6r1nA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.50 41.0 3.81e-01 87.8% 73.8%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4974797 3352.1.1.0 alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain 0.65 48.0 3.16e-01 80.5% 90.8%
3252871 5000.4.1.0 alpha arrays › Toxins' membrane translocation domains › delta-Endotoxin (insectocide), N-terminal domain › delta-Endotoxin (insectocide), N-terminal domain 0.59 51.0 3.75e-01 97.6% 92.2%
4953775 4163.1.1.0 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like 0.57 39.0 3.32e-01 84.1% 44.6%
3725376 192.1.1.15 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › DUF6604 0.56 42.0 4.34e-01 97.6% 81.2%
4983057 4163.1.1.0 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like 0.53 44.0 4.07e-01 97.6% 71.0%
D2 medium residues 83-182
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xu8A00 3.90.70.190 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Domain of unknown function (DUF5086) 0.70 47.0 4.46e-01 73.0% 58.6%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 44.0 4.05e-01 74.0% 91.7%
5tfqA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.62 50.0 3.66e-01 88.0% 69.3%
1v3eA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.60 48.0 3.15e-01 87.0% 46.2%
4uf7B00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.59 46.0 3.10e-01 85.0% 47.8%
1eurA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.58 43.0 2.95e-01 78.0% 32.4%
2mj7A00 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.58 37.0 3.36e-01 87.0% 45.4%
1m6kA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.57 45.0 3.41e-01 85.0% 65.2%
3er7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 41.0 3.84e-01 74.0% 92.7%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 41.0 3.45e-01 76.0% 65.7%
4r7kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 42.0 3.59e-01 90.0% 47.6%
2daxA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.56 45.0 4.10e-01 90.0% 78.0%
4dohE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 35.0 3.60e-01 80.0% 65.3%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 40.0 3.40e-01 78.0% 69.3%
4pn0C00 3.20.100.10 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › mRNA triphosphatase Cet1-like 0.55 42.0 3.17e-01 82.0% 94.5%
3ebyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 42.0 3.74e-01 84.0% 88.9%
2nq3A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.55 42.0 3.92e-01 84.0% 86.3%
1w15A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.54 40.0 3.71e-01 79.0% 86.4%
1ms9A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.54 46.0 3.17e-01 95.0% 31.2%
3lydA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.54 41.0 3.73e-01 83.0% 61.3%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 44.0 4.05e-01 90.0% 95.4%
4gn2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 44.0 3.44e-01 93.0% 69.2%
1xkzC00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 42.0 3.25e-01 88.0% 60.9%
2cm5A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.53 41.0 3.67e-01 83.0% 83.2%
1e3uD00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 42.0 3.26e-01 88.0% 64.9%
3ff2A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 39.0 3.73e-01 78.0% 93.2%
7a1rA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.53 41.0 3.90e-01 84.0% 91.5%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 40.0 3.73e-01 81.0% 91.4%
2ba1D01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.53 47.0 3.54e-01 96.0% 65.7%
3jzyA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.53 40.0 3.81e-01 83.0% 88.7%
1f49A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 43.0 3.16e-01 91.0% 45.9%
2oq8A00 2.60.40.2930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 40.0 3.59e-01 84.0% 87.3%
2h41A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 31.0 3.18e-01 76.0% 58.9%
3o2uA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.52 45.0 3.89e-01 98.0% 79.0%
2b3rA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 40.0 3.81e-01 84.0% 88.7%
3fdwA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 40.0 3.76e-01 85.0% 87.7%
7c5wA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 39.0 3.46e-01 81.0% 99.3%
4hd5A01 2.60.40.3760 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 35.0 3.58e-01 86.0% 72.2%
3f14A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 38.0 3.75e-01 81.0% 96.4%
6dnzA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.51 41.0 3.51e-01 91.0% 93.8%
3l9bA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 39.0 3.65e-01 82.0% 84.9%
3cnxA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 38.0 3.50e-01 81.0% 92.8%
2imjD01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 3.70e-01 89.0% 81.0%
6eheA01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.51 42.0 3.07e-01 93.0% 58.5%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.50 41.0 3.42e-01 92.0% 65.8%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3278065 4312.1.1.4 a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.77 52.0 5.05e-01 87.0% 62.7%
3231582 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.65 48.0 3.88e-01 77.0% 52.4%
5016404 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.64 48.0 5.28e-01 82.0% 100.0%
3436325 331.15.1.0 a+b two layers › TBP-like › Anti-CRISPR protein AcrID1 › Anti-CRISPR protein AcrID1 0.64 43.0 4.24e-01 75.0% 64.8%
3622016 2484.5.1.6 mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › Peptidase_A17 0.63 42.0 4.14e-01 73.0% 63.8%
3990705 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.63 45.0 3.68e-01 73.0% 67.8%
3991810 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.63 57.0 4.97e-01 100.0% 76.7%
4981385 504.1.1.0 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.63 48.0 4.59e-01 80.0% 73.0%
3487450 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.62 56.0 4.91e-01 99.0% 82.1%
4003224 9.1.1.48 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 0.62 44.0 3.62e-01 77.0% 41.1%
4940126 504.1.1.0 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.61 44.0 4.22e-01 77.0% 76.7%
5025337 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.60 51.0 4.08e-01 94.0% 88.8%
3507252 2484.1.1.99 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Peptidase_A17 0.60 42.0 3.81e-01 76.0% 53.3%
3271532 223.3.1.8 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 0.60 46.0 3.90e-01 89.0% 47.4%
3661724 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 44.0 3.05e-01 83.0% 32.7%
4325844 5085.1.1.2 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › PF27489, PF29296 0.57 47.0 3.02e-01 88.0% 64.2%
4023575 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 43.0 4.41e-01 81.0% 89.5%
4946845 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.56 39.0 2.93e-01 71.0% 37.3%
3424861 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.56 42.0 2.82e-01 79.0% 36.3%
3174097 11.1.1.41 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.56 44.0 3.60e-01 86.0% 87.4%
5022763 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 43.0 3.07e-01 85.0% 45.8%
4059480 881.1.1.37 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PF27270 0.55 44.0 3.70e-01 90.0% 49.7%
3460112 9.2.1.4 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF2921_N 0.55 41.0 3.32e-01 80.0% 77.1%
3648728 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.55 44.0 3.06e-01 87.0% 37.8%
3663778 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.55 44.0 3.07e-01 87.0% 33.7%
3236478 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.55 42.0 3.71e-01 83.0% 99.3%
4003858 883.1.1.15 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C 0.54 45.0 2.96e-01 93.0% 47.6%
3482641 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.54 41.0 3.54e-01 83.0% 86.7%
3233104 11.2.1.8 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 0.54 41.0 3.64e-01 84.0% 79.4%
3224838 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.54 38.0 2.67e-01 74.0% 28.2%
4202176 220.1.1.123 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.53 43.0 3.58e-01 90.0% 86.3%
3682458 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 40.0 2.74e-01 82.0% 30.3%
3599949 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 34.0 3.51e-01 74.0% 70.5%
3175912 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.52 46.0 3.71e-01 100.0% 90.5%
3227179 243.1.1.85 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26531 0.52 41.0 3.95e-01 88.0% 90.0%
3446982 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.52 40.0 3.65e-01 84.0% 89.6%
3530521 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.52 34.0 3.43e-01 84.0% 66.0%
3246129 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.51 42.0 2.90e-01 91.0% 45.3%
3289863 243.1.1.63 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF6841 0.51 39.0 3.48e-01 81.0% 92.4%
3439384 11.2.1.35 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › GRDP-like 0.51 35.0 2.82e-01 70.0% 48.8%
3942866 5084.5.1.20 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_8 0.51 43.0 3.01e-01 97.0% 38.7%
3967227 9.3.1.0 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.51 42.0 3.56e-01 94.0% 60.6%
3904325 11.1.1.617 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TMEM132_2nd 0.50 37.0 3.35e-01 89.0% 54.5%
3248518 243.1.1.12 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.50 40.0 3.81e-01 88.0% 78.0%
3505094 213.1.1.5 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › MOZ_SAS 0.50 37.0 3.41e-01 80.0% 70.7%
3740272 5.1.4.32 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.50 38.0 2.58e-01 83.0% 28.3%