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ON189044.1__URA06965.1__Pfeifenkraut_BL30068__00068

Bact-Vir

ON189044.1__URA06965.1__Pfeifenkraut_BL30068__00068

Identity

Accession:
ON189044 ↗
Kingdom:
phage

Quality

91.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Shirevirus› Xanthomonas_phage_Pfeifenkraut

TaxID: 2939132

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 86-150
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 46.0 4.23e-01 81.5% 73.5%
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.60 38.0 2.59e-01 89.2% 16.0%
1y56A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 50.0 3.50e-01 96.9% 77.5%
3en8A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 42.0 3.65e-01 80.0% 83.9%
1nycA00 2.40.310.10 Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors 0.58 41.0 3.47e-01 73.8% 67.6%
2k54A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 42.0 3.52e-01 80.0% 79.7%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 44.0 3.82e-01 84.6% 61.8%
2ovrB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 41.0 2.58e-01 76.9% 22.7%
3l4rA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 43.0 3.40e-01 86.2% 65.6%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 34.0 3.75e-01 86.2% 86.7%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.53 41.0 3.71e-01 86.2% 90.4%
1tj6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 41.0 3.55e-01 89.2% 74.8%
2pi2D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 42.0 3.44e-01 89.2% 82.1%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 4.01e-01 86.2% 89.2%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 33.0 3.60e-01 86.2% 85.7%
1yp2A02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.52 34.0 2.61e-01 87.7% 32.6%
3u4zA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 38.0 3.33e-01 83.1% 70.6%
2ivdB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 40.0 3.10e-01 89.2% 90.9%
2jaeA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 35.0 2.70e-01 92.3% 26.5%
4l5tB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 38.0 3.48e-01 83.1% 78.0%
4gnxB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 40.0 3.36e-01 89.2% 85.2%
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.51 36.0 3.59e-01 83.1% 72.7%
5zg8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 38.0 3.42e-01 86.2% 80.4%
3rn5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 38.0 3.52e-01 86.2% 80.4%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 36.0 3.71e-01 87.7% 79.7%
4l5rC02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 37.0 3.49e-01 84.6% 82.0%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 39.0 3.35e-01 87.7% 76.6%
1reoA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 41.0 3.21e-01 92.3% 91.2%
2durB01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 39.0 2.83e-01 92.3% 61.6%
6jwfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.50 43.0 2.72e-01 100.0% 36.1%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4930329 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 34.0 3.80e-01 83.1% 78.0%
3709133 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 44.0 3.70e-01 87.7% 80.8%
3692799 2003.1.2.65 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like, Pyr_redox_3 0.55 45.0 2.61e-01 87.7% 31.2%
4600473 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.55 42.0 3.36e-01 83.1% 97.0%
5012551 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 40.0 3.80e-01 83.1% 80.0%
4965786 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.54 39.0 3.99e-01 89.2% 80.0%
4935086 3504.3.1.1 ↗ beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.53 37.0 2.85e-01 72.3% 76.8%
4230632 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.53 40.0 3.28e-01 84.6% 97.0%
3591052 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 38.0 3.88e-01 80.0% 100.0%
5077487 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.53 41.0 3.28e-01 86.2% 90.7%
1281147 9.23.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › Lipocalin_3 0.53 41.0 3.69e-01 86.2% 90.4%
3404925 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.52 37.0 3.98e-01 87.7% 98.0%
160497 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.52 35.0 3.47e-01 80.0% 64.8%
5046464 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.52 34.0 2.95e-01 86.2% 38.3%
3260369 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.52 34.0 3.68e-01 87.7% 97.8%
3225098 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 3.78e-01 89.2% 97.6%
4200618 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.52 43.0 3.60e-01 93.8% 95.7%
4949158 244.2.1.1 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Pyr_redox_dim 0.51 42.0 2.92e-01 92.3% 42.7%
3596264 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 38.0 3.30e-01 83.1% 79.1%
3199763 220.1.1.202 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_N 0.51 38.0 3.16e-01 81.5% 53.6%
4934074 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 38.0 3.30e-01 83.1% 62.7%
3281927 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.51 38.0 3.18e-01 83.1% 96.8%
4190130 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.51 33.0 3.04e-01 87.7% 47.8%
4192943 2003.1.2.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.51 41.0 3.37e-01 90.8% 74.4%
2718212 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.51 34.0 3.35e-01 80.0% 63.0%
4936051 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 36.0 3.80e-01 84.6% 90.9%
4057742 2.4.1.11 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.50 38.0 3.80e-01 87.7% 83.1%
D2 medium residues 1-76
PDB
Domain cluster: rep: OR225224.1__WLJ71236.1__X__00054__D187-252
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qgpB00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.81 58.0 5.09e-01 73.7% 57.0%
5xs2B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 39.0 3.37e-01 81.6% 77.3%
3sf6A01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.51 36.0 3.14e-01 82.9% 45.7%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3550549 109.4.1.673 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fanconi_A_N 0.63 46.0 2.83e-01 77.6% 22.9%
3957725 4033.1.1.1 ↗ alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N 0.57 43.0 3.63e-01 81.6% 90.0%